Parental gene:

HDGF, ENSG00000143321

Aliases:HDGF, HMG1L2
Description:hepatoma-derived growth factor [Source:HGNC Symbol;Acc:4856]
Organism:Human (Homo sapiens)
Coordinates:1:156711898..156736717(-)


>ENSG00000143321
ATGCACCCGGAAGGTGGCCAATTTGTGCCTCAACTCCTTGGCCATCTCCTGGCTACCAAACTCAAGCGTTTCCTCCTTAG
CAAAGGCGGACGTAGGGCTCAAATCCCCGACGTTTCCAGGGCCACCCCCCATACGATTGACGAGATGCCTGAGGCTGCCG
TGAAATCAACAGCCAACAAATACCAAGTCTTTTTTTTCGGGACCCACGAGACGGCATTCCTGGGCCCCAAAGACCTCTTC
CCTTACGAGGAATCCAAGGAGAAGTTTGGCAAGCCCAACAAGAGGAAAGGGTTCAGCGAGGGGCTGTGGGAGATCGAGAA
CAACCCTACTGTCAAGGCTTCCGGCTATCAGTCCTCCCAGAAAAAGAGCTGTGTGGAAGAGCCTGAACCAGAGCCCGAAG
CTGCAGAGGGTGACGGTGATAAGAAGGGGAATGCAGAGGGCAGCAGCGACGAGGAAGGGAAGCTGGTCATTGATGAGCCA
GCCAAGGAGAAGAACGAGAAAGGAGCGTTGAAGAGGAGAGCAGGGGACTTGCTGGAGGACTCTCCTAAACGTCCCAAGGA
GGCAGAAAACCCTGAAGGAGAGGAGAAGGAGGCAGCCACCTTGGAGGTTGAGAGGCCCCTTCCTATGGAGGTGGAAAAGA
ATAGCACCCCCTCTGAGCCCGGCTCTGGCCGGGGGCCTCCCCAAGAGGAAGAAGAGGAGGAGGATGAAGAGGAAGAGGCT
ACCAAGGAAGATGCTGAGGCCCCAGGCATCAGAGATCATGAGAGCCTGTAG

Library Parental gene expression (RPM)
bodymap2_liver 168 .14 RPM
bodymap2_lung 326 .44 RPM
bodymap2_breast 117 .76 RPM
bodymap2_adipose 156 .00 RPM
bodymap2_adrenal 133 .03 RPM
bodymap2_skeletal_muscle 191 .55 RPM
bodymap2_thyroid 196 .33 RPM
bodymap2_prostate 120 .29 RPM
bodymap2_colon 153 .12 RPM
bodymap2_testis 116 .72 RPM
bodymap2_brain 83 .73 RPM
bodymap2_heart 123 .80 RPM
bodymap2_white_blood_cells 164 .26 RPM
bodymap2_lymph_node 166 .98 RPM
bodymap2_ovary 164 .47 RPM
bodymap2_kidney 164 .04 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000039793 ortholog_one2one 1 retrogene
retro_btau_216,
Callithrix jacchus ENSCJAG00000006157 ortholog_one2one 2 retrogenes
retro_cjac_338, retro_cjac_4022,
Dasypus novemcinctus ENSDNOG00000010231 ortholog_one2many 1 retrogene
retro_dnov_4,
Equus caballus ENSECAG00000011178 ortholog_one2one 1 retrogene
retro_ecab_5,
Echinops telfairi ENSETEG00000005243 ortholog_one2one 1 retrogene
retro_etel_1899,
Homo sapiens ENSG00000164985 within_species_paralog 1 retrogene
retro_hsap_4136,
Myotis lucifugus ENSMLUG00000010413 ortholog_one2one 1 retrogene
retro_mluc_257,
Mus musculus ENSMUSG00000004897 ortholog_one2one 1 retrogene
retro_mmus_3647,
Pongo abelii ENSPPYG00000000703 ortholog_one2one 1 retrogene
retro_pabe_6,
Pan troglodytes ENSPTRG00000001474 ortholog_one2one 1 retrogene
retro_ptro_1,
Sus scrofa ENSSSCG00000006468 ortholog_one2one 1 retrogene
retro_sscr_65,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_33 65.71 58.33
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Download FASTA sequences of all ENSG00000143321 retrocopies