Parental gene:

CBX3, ENSG00000122565

Aliases:CBX3, HECH, HP1-GAMMA, HP1Hs-gamma
Description:chromobox homolog 3 [Source:HGNC Symbol;Acc:1553]
Organism:Human (Homo sapiens)
Coordinates:7:26240781..26252976(+)


>ENSG00000122565
ATGGCCTCCAACAAAACTACATTGCAAAAAATGGGAAAAAAACAGAATGGAAAGAGTAAAAAAGTTGAAGAGGCAGAGCC
TGAAGAATTTGTCGTGGAAAAAGTACTAGATCGACGTGTAGTGAATGGGAAAGTGGAATATTTCCTGAAGTGGAAGGGAT
TTACAGATGCTGACAATACTTGGGAACCTGAAGAAAATTTAGATTGTCCAGAATTGATTGAAGCGTTTCTTAACTCTCAG
AAAGCTGGCAAAGAAAAAGATGGTACAAAAAGAAAATCTTTATCTGACAGTGAATCTGATGACAGCAAATCAAAGAAGAA
AAGAGATGCTGCTGACAAACCAAGAGGATTTGCCAGAGGTCTTGATCCTGAAAGAATAATTGGTGCCACAGACAGCAGTG
GAGAATTGATGTTTCTCATGAAATGGAAAGATTCAGATGAGGCAGACTTGGTGCTGGCGAAAGAGGCAAATATGAAGTGT
CCTCAAATTGTAATTGCTTTTTATGAAGAGAGACTAACTTGGCATTCTTGTCCAGAAGATGAAGCTCAATAA

Library Parental gene expression (RPM)
bodymap2_liver 48 .92 RPM
bodymap2_lung 102 .48 RPM
bodymap2_breast 90 .72 RPM
bodymap2_adipose 80 .86 RPM
bodymap2_adrenal 120 .32 RPM
bodymap2_skeletal_muscle 50 .11 RPM
bodymap2_thyroid 103 .27 RPM
bodymap2_prostate 106 .43 RPM
bodymap2_colon 114 .62 RPM
bodymap2_testis 233 .46 RPM
bodymap2_brain 96 .53 RPM
bodymap2_heart 57 .25 RPM
bodymap2_white_blood_cells 138 .39 RPM
bodymap2_lymph_node 120 .81 RPM
bodymap2_ovary 121 .93 RPM
bodymap2_kidney 134 .05 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000013843 ortholog_one2one 22 retrogenes
retro_chof_1128, retro_chof_1147, retro_chof_1156, retro_chof_1178, retro_chof_1210, retro_chof_1223, retro_chof_132, retro_chof_1569, retro_chof_1672, retro_chof_1779, retro_chof_1863, retro_chof_1962, retro_chof_222, retro_chof_2269, retro_chof_2347, retro_chof_2379, retro_chof_2435, retro_chof_2695, retro_chof_411, retro_chof_676, retro_chof_87, retro_chof_936,
Cavia porcellus ENSCPOG00000015168 ortholog_one2one 1 retrogene
retro_cpor_66,
Felis catus ENSFCAG00000015224 possible_ortholog 6 retrogenes
retro_fcat_1005, retro_fcat_1103, retro_fcat_1485, retro_fcat_1519, retro_fcat_336, retro_fcat_473,
Homo sapiens ENSG00000094916 within_species_paralog 1 retrogene
retro_hsap_2811,
Homo sapiens ENSG00000108468 within_species_paralog 3 retrogenes
retro_hsap_4654, retro_hsap_4790, retro_hsap_4840,
Nomascus leucogenys ENSNLEG00000014931 ortholog_one2one 9 retrogenes
retro_nleu_141, retro_nleu_1685, retro_nleu_2462, retro_nleu_373, retro_nleu_397, retro_nleu_511, retro_nleu_676, retro_nleu_944, retro_nleu_964,
Ochotona princeps ENSOPRG00000011713 ortholog_one2one 9 retrogenes
retro_opri_103, retro_opri_159, retro_opri_209, retro_opri_300, retro_opri_429, retro_opri_569, retro_opri_598, retro_opri_728, retro_opri_733,
Sorex araneus ENSSARG00000008011 ortholog_one2one 2 retrogenes
retro_sara_496, retro_sara_709,
Sarcophilus harrisii ENSSHAG00000017913 ortholog_one2one 1 retrogene
retro_shar_153,
Sus scrofa ENSSSCG00000016711 ortholog_one2one 4 retrogenes
retro_sscr_1031, retro_sscr_204, retro_sscr_420, retro_sscr_755,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_766 89.73 100.00
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2. retro_hsap_910 69.57 87.43
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3. retro_hsap_1071 80.41 53.01
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4. retro_hsap_1145 84.92 96.72
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5. retro_hsap_1902 68.18 82.51
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6. retro_hsap_2332 73.61 78.69
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7. retro_hsap_2771 70.30 55.19
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8. retro_hsap_3368 80.00 92.90
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9. retro_hsap_3650 95.71 88.52
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Download FASTA sequences of all ENSG00000122565 retrocopies