Parental gene:

IK, ENSG00000113141

Aliases:IK, CSA2, RED
Description:IK cytokine, down-regulator of HLA II [Source:HGNC Symbol;Acc:5958]
Organism:Human (Homo sapiens)
Coordinates:5:140026642..140042064(+)


>ENSG00000113141
ATGCCGGAGCGAGATAGTGAGCCGTTCTCCAACCCTTTGGCCCCCGATGGCCACGATGTGGATGATCCTCACTCCTTCCA
CCAATCAAAACTCACCAATGAAGACTTCAGGAAACTTCTCATGACCCCCAGGGCTGCACCTACCTCTGCACCACCTTCTA
AGTCACGTCACCATGAGATGCCAAGGGAGTACAATGAGGATGAAGACCCAGCTGCACGAAGGAGGAAAAAGAAAAGTTAT
TATGCCAAGCTACGCCAACAAGAAATTGAGAGAGAGAGAGAGCTAGCAGAGAAGTACCGGGATCGTGCCAAGGAACGGAG
AGATGGAGTGAACAAAGATTATGAAGAAACCGAGCTTATCAGCACCACAGCTAACTATAGGGCTGTTGGCCCCACTGCTG
AGGCGGACAAATCAGCTGCAGAGAAGAGAAGACAGTTGATCCAGGAGTCCAAATTCTTGGGTGGTGACATGGAACACACC
CATTTGGTGAAAGGCTTGGATTTTGCTCTGCTTCAAAAGGTACGAGCTGAGATTGCCAGCAAAGAGAAAGAGGAAGAGGA
ACTGATGGAAAAGCCCCAGAAAGAAACCAAGAAAGATGAGGATCCTGAAAATAAAATTGAATTTAAAACACGTCTGGGCC
GCAATGTTTACCGAATGCTTTTTAAGAGCAAAGCATATGAGCGGAATGAGTTGTTCCTGCCGGGCCGCATGGCCTATGTG
GTAGACCTGGATGATGAGTATGCTGACACAGATATCCCCACCACTCTTATCCGCAGCAAGGCTGATTGCCCCACCATGGA
GGCCCAGACCACACTGACCACAAATGACATTGTCATTAGCAAGCTGACCCAGATCCTTTCATACCTGAGGCAGGGAACCC
GTAACAAGAAGCTTAAGAAGAAGGATAAAGGGAAGCTGGAAGAGAAGAAACCTCCTGAGGCTGACATGAATATTTTTGAA
GACATTGGGGATTACGTACCCTCCACAACCAAGACACCTCGGGACAAGGAGCGGGAGAGATATCGGGAACGGGAGCGTGA
TCGGGAAAGAGACAGAGACCGTGACCGAGAGCGAGAGCGAGAACGAGATCGGGAACGAGAGCGAGAGCGGGACCGAGAGA
GAGAAGAGGAAAAGAAGAGACACAGCTACTTTGAGAAGCCAAAAGTAGATGATGAGCCCATGGACGTTGACAAAGGACCT
GGGTCTACCAAGGAGTTGATCAAGTCCATCAATGAAAAGTTTGCTGGGTCTGCTGGCTGGGAAGGCACAGAATCGCTGAA
GAAGCCAGAAGACAAAAAGCAGCTGGGAGATTTCTTTGGCATGTCCAACAGTTATGCAGAGTGCTACCCAGCCACGATGG
ATGACATGGCTGTGGATAGTGATGAGGAGGTGGATTATAGCAAAATGGACCAGGGTAACAAGAAGGGGCCCTTAGGCCGT
TGGGACTTTGATACCCAGGAAGAATACAGCGAGTATATGAACAACAAAGAAGCTTTGCCCAAGGCTGCATTCCAGTATGG
TATCAAAATGTCTGAAGGGCGGAAAACCAGGCGCTTCAAGGAAACCAATGACAAAGCAGAGCTTGATCGCCAGTGGAAGA
AGATTAGTGCAATCATTGAGAAGAGGAAGAAGATGGAAGCTGATGGGGTTGAAGTCAAAAGACCAAAATACTAA

Library Parental gene expression (RPM)
bodymap2_liver 31 .79 RPM
bodymap2_lung 99 .75 RPM
bodymap2_breast 113 .68 RPM
bodymap2_adipose 134 .32 RPM
bodymap2_adrenal 122 .51 RPM
bodymap2_skeletal_muscle 126 .91 RPM
bodymap2_thyroid 184 .15 RPM
bodymap2_prostate 117 .22 RPM
bodymap2_colon 143 .24 RPM
bodymap2_testis 222 .67 RPM
bodymap2_brain 108 .04 RPM
bodymap2_heart 48 .15 RPM
bodymap2_white_blood_cells 135 .33 RPM
bodymap2_lymph_node 86 .96 RPM
bodymap2_ovary 150 .61 RPM
bodymap2_kidney 74 .14 RPM



Species Parental gene accession Homology type Retrogenes number
Dasypus novemcinctus ENSDNOG00000009727 ortholog_one2one 3 retrogenes
retro_dnov_618, retro_dnov_714, retro_dnov_960,
Dipodomys ordii ENSDORG00000006584 ortholog_one2one 4 retrogenes
retro_dord_128, retro_dord_130, retro_dord_134, retro_dord_139,
Gorilla gorilla ENSGGOG00000013374 ortholog_one2one 1 retrogene
retro_ggor_1685,
Loxodonta africana ENSLAFG00000008152 ortholog_one2one 1 retrogene
retro_lafr_362,
Otolemur garnettii ENSOGAG00000014281 ortholog_one2one 1 retrogene
retro_ogar_1402,
Pongo abelii ENSPPYG00000015861 ortholog_one2one 1 retrogene
retro_pabe_1954,
Sorex araneus ENSSARG00000007388 ortholog_one2one 3 retrogenes
retro_sara_416, retro_sara_419, retro_sara_558,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_2262 92.84 62.48
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Download FASTA sequences of all ENSG00000113141 retrocopies