Parental gene: | VPS29, ENSFCAG00000004135 |
| Aliases: | None |
| Description: | vacuolar protein sorting 29 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:14340] |
| Organism: | Cat (Felis catus) |
| Coordinates: | D3:8473334..8482159(-) |
>ENSFCAG00000004135
ATGGCTGGGCACAGATTGGTGTTGGTATTAGGAGACCTGCACATCCCACACCGGTGCAACAGTTTGCCGGCTAAATTCAA
AAAACTGCTGGTGCCAGGAAAGATTCAGCACATTCTCTGTACTGGAAACCTTTGCACCAAAGAGAGTTATGACTATCTCA
AGACTCTGGCCGGTGATGTTCATATTGTGAGAGGAGACTTCGATGAGAATCTGAATTATCCAGAACAGAAAGTTGTGACT
GTTGGGCAGTTCAAAATTGGTTTGATCCATGGGCATCAAGTTATTCCTTGGGGAGACATGGCCAGCTTAGCCCTGTTGCA
GAGGCAGTTTGATGTGGACATTCTTATCTCGGGACACACACACAAATTTGAAGCATTTGAGCATGAAAATAAATTTTACA
TTAATCCAGGTTCTGCCACTGGAGCATATAATGCCTTGGAAACAAACATTATTCCTTCATTTGTGTTGATGGATATCCAG
GCTTCTACAGTTGTCACTTATGTGTATCAGCTAATTGGAGATGATGTGAAAGTAGAACGAATTGAATACAAAAAATCTTA
A
ATGGCTGGGCACAGATTGGTGTTGGTATTAGGAGACCTGCACATCCCACACCGGTGCAACAGTTTGCCGGCTAAATTCAA
AAAACTGCTGGTGCCAGGAAAGATTCAGCACATTCTCTGTACTGGAAACCTTTGCACCAAAGAGAGTTATGACTATCTCA
AGACTCTGGCCGGTGATGTTCATATTGTGAGAGGAGACTTCGATGAGAATCTGAATTATCCAGAACAGAAAGTTGTGACT
GTTGGGCAGTTCAAAATTGGTTTGATCCATGGGCATCAAGTTATTCCTTGGGGAGACATGGCCAGCTTAGCCCTGTTGCA
GAGGCAGTTTGATGTGGACATTCTTATCTCGGGACACACACACAAATTTGAAGCATTTGAGCATGAAAATAAATTTTACA
TTAATCCAGGTTCTGCCACTGGAGCATATAATGCCTTGGAAACAAACATTATTCCTTCATTTGTGTTGATGGATATCCAG
GCTTCTACAGTTGTCACTTATGTGTATCAGCTAATTGGAGATGATGTGAAAGTAGAACGAATTGAATACAAAAAATCTTA
A
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 34 .47 RPM |
| SRP017611_kidney | 73 .27 RPM |
| SRP017611_brain | 43 .15 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Anolis carolinensis | ENSACAG00000001891 | possible_ortholog | 1 retrogene | |
| Loxodonta africana | ENSLAFG00000006176 | possible_ortholog | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000011924 | ortholog_one2one | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000012756 | ortholog_one2one | 4 retrogenes | |
| Tursiops truncatus | ENSTTRG00000015090 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_fcat_165 | 75.14 | 96.77 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_fcat_848 | 78.95 | 89.78 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSFCAG00000004135 retrocopies