Parental gene:

eca-mir-703, ENSECAG00000020363

Aliases:EEF1A1, EF-1A, EF-Tu, EF1A, eEF1A-1
Description:eca-mir-703 [Source:miRBase;Acc:MI0012753]
Organism:Horse (Equus caballus)
Coordinates:10:28406911..28409359(-)


>ENSECAG00000020363
ATGGGGAAGGAAAAGACTCATATCAACATCGTCGTCATTGGGCACGTCGATTCGGGCAAGTCCACCACGACTGGCCACCT
GATCTACAAGTGCGGTGGGATCGACAAAAGAACCATCGAGAAATTCGAGAAGGAGGCTGCTGAGATGGGAAAGGGCTCCT
TCAAGTATGCCTGGGTCTTGGATAAACTGAAAGCTGAACGTGAGCGTGGTATCACCATTGATATCTCCCTGTGGAAATTC
GAGACCAGCAAGTATTATGTGACCATCATTGATGCCCCCGGACACAGAGACTTCATCAAAAACATGATTACAGGCACGTC
TCAGGCTGACTGTGCTGTCCTCATTGTCGCTGCTGGTGTTGGTGAATTTGAAGCAGGTATCTCCAAGAATGGGCAGACCC
GTGAGCATGCCCTTCTGGCTTACACACTGGGTGTGAAACAACTAATTGTTGGTGTTAACAAAATGGATTCCACTGAGCCA
CCTTACAGCCAGAAGAGATATGAGGAAATCGTTAAGGAAGTCAGCACCTACATTAAGAAAATTGGTTACAACCCAGACAC
AGTTGCATTTGTGCCAATTTCTGGTTGGAATGGTGACAACATGCTGGAGCCAAGTGCTAATATGCCTTGGTTCAAGGGAT
GGAAAGTCACCCGTAAAGATGGCAATGCCAGTGGAACTACGCTGCTTGAAGCTCTGGATTGCATCCTGCCACCAACTCGT
CCAACTGATAAGCCCTTGCGTCTGCCCCTCCAGGACGTCTACAAAATTGGTGGTATTGGTACTGTCCCTGTGGGCCGAGT
GGAGACTGGTGTTTTGAAACCTGGCATGGTGGTTACCTTTGCTCCAGTCAATGTTACAACTGAAGTAAAGTCTGTTGAAA
TGCATCATGAAGCTTTGAGCGAAGCTCTTCCTGGGGACAACGTGGGCTTCAATGTCAAGAACGTGTCCGTCAAAGATGTT
CGCCGTGGCAATGTGGCTGGTGACAGCAAAAATGATCCACCAATGGAAGCAGCTGGCTTCACAGCTCAGGTGATTATCCT
GAACCATCCAGGCCAAATCAGTGCTGGGTATGCACCTGTGCTGGATTGTCACACAGCTCACATTGCTTGCAAGTTTGCTG
AGCTGAAGGAGAAGATTGATCGTCGTTCTGGAAAGAAGCTGGAAGATGGCCCCAAATTCTTGAAATCTGGTGATGCTGCC
ATCGTTGATATGGTTCCTGGCAAGCCCATGTGTGTTGAGAGCTTTTCTGACTATCCTCCTCTGGGCCGTTTTGCTGTTCG
TGACATGAGACAGACGGTTGCTGTGGGTGTCATCAAAGCAGTGGACAAGAAAGCAGCTGGAGCTGGCAAGGTCACCAAGT
CTGCCCAGAAGGCTCAGAAGGCTAAATGA

Library Parental gene expression (RPM)
SRP021940_synovial_membrane 599 .36 RPM
SRP021940_embryo 697 .24 RPM
SRP021940_cerebellum 347 .32 RPM
SRP021940_testis 249 .83 RPM
SRP021940_placental_villous 528 .74 RPM
SRP021940_articular_cartilage 831 .49 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000014534 ortholog_one2one 3 retrogenes
retro_btau_114, retro_btau_115, retro_btau_192,
Canis familiaris ENSCAFG00000013249 possible_ortholog 1 retrogene
retro_cfam_1007,
Dipodomys ordii ENSDORG00000009629 possible_ortholog 1 retrogene
retro_dord_509,
Equus caballus ENSECAG00000022260 within_species_paralog 1 retrogene
retro_ecab_802,
Erinaceus europaeus ENSEEUG00000000342 possible_ortholog 3 retrogenes
retro_eeur_407, retro_eeur_492, retro_eeur_625,
Felis catus ENSFCAG00000030977 ortholog_one2one 14 retrogenes
retro_fcat_1021, retro_fcat_1388, retro_fcat_1569, retro_fcat_1683, retro_fcat_1825, retro_fcat_184, retro_fcat_1915, retro_fcat_220, retro_fcat_221, retro_fcat_334, retro_fcat_515, retro_fcat_566, retro_fcat_688, retro_fcat_737,
Homo sapiens ENSG00000156508 ortholog_one2one 27 retrogenes
retro_hsap_1093, retro_hsap_1181, retro_hsap_1567, retro_hsap_1671, retro_hsap_190, retro_hsap_2302, retro_hsap_2455, retro_hsap_2637, retro_hsap_2712, retro_hsap_278, retro_hsap_283, retro_hsap_2896, retro_hsap_2920, retro_hsap_2967, retro_hsap_2983, retro_hsap_3239, retro_hsap_3291, retro_hsap_3314, retro_hsap_363, retro_hsap_3701, retro_hsap_3706, retro_hsap_3758, retro_hsap_3825, retro_hsap_3917, retro_hsap_4220, retro_hsap_4730, retro_hsap_989,
Loxodonta africana ENSLAFG00000028081 possible_ortholog 1 retrogene
retro_lafr_651,
Myotis lucifugus ENSMLUG00000013537 ortholog_one2many 24 retrogenes
retro_mluc_110, retro_mluc_1252, retro_mluc_1392, retro_mluc_1430, retro_mluc_1558, retro_mluc_1628, retro_mluc_1644, retro_mluc_1853, retro_mluc_1901, retro_mluc_1910, retro_mluc_2071, retro_mluc_2148, retro_mluc_2154, retro_mluc_2277, retro_mluc_2355, retro_mluc_2358, retro_mluc_2359, retro_mluc_2391, retro_mluc_441, retro_mluc_470, retro_mluc_677, retro_mluc_950, retro_mluc_956, retro_mluc_966,
Monodelphis domestica ENSMODG00000018533 possible_ortholog 4 retrogenes
retro_mdom_1053, retro_mdom_1146, retro_mdom_311, retro_mdom_792,
Mustela putorius furo ENSMPUG00000003816 ortholog_one2many 6 retrogenes
retro_mputfur_1514, retro_mputfur_1643, retro_mputfur_220, retro_mputfur_502, retro_mputfur_844, retro_mputfur_862,
Mustela putorius furo ENSMPUG00000004271 ortholog_one2many 10 retrogenes
retro_mputfur_1179, retro_mputfur_1276, retro_mputfur_1351, retro_mputfur_1394, retro_mputfur_284, retro_mputfur_355, retro_mputfur_474, retro_mputfur_678, retro_mputfur_920, retro_mputfur_973,
Mus musculus ENSMUSG00000037742 possible_ortholog 15 retrogenes
retro_mmus_1349, retro_mmus_1518, retro_mmus_1667, retro_mmus_1783, retro_mmus_1816, retro_mmus_1849, retro_mmus_1850, retro_mmus_1864, retro_mmus_1909, retro_mmus_2363, retro_mmus_2583, retro_mmus_2902, retro_mmus_3249, retro_mmus_480, retro_mmus_483,
Oryctolagus cuniculus ENSOCUG00000008481 ortholog_one2one 3 retrogenes
retro_ocun_1102, retro_ocun_187, retro_ocun_71,
Ochotona princeps ENSOPRG00000016685 ortholog_one2one 6 retrogenes
retro_opri_1049, retro_opri_1076, retro_opri_1197, retro_opri_298, retro_opri_325, retro_opri_383,
Sus scrofa ENSSSCG00000004489 ortholog_one2one 4 retrogenes
retro_sscr_169, retro_sscr_492, retro_sscr_612, retro_sscr_758,
Ictidomys tridecemlineatus ENSSTOG00000007687 possible_ortholog 4 retrogenes
retro_itri_1509, retro_itri_1740, retro_itri_1816, retro_itri_195,
Tursiops truncatus ENSTTRG00000000114 ortholog_one2one 19 retrogenes
retro_ttru_1020, retro_ttru_1150, retro_ttru_1196, retro_ttru_1349, retro_ttru_1351, retro_ttru_1368, retro_ttru_1384, retro_ttru_1810, retro_ttru_1861, retro_ttru_1876, retro_ttru_384, retro_ttru_390, retro_ttru_401, retro_ttru_523, retro_ttru_664, retro_ttru_698, retro_ttru_844, retro_ttru_941, retro_ttru_998,
Drosophila melanogaster FBgn0000557 ortholog_many2many 1 retrogene
retro_dmel_9,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_66 99.57 100.00
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2. retro_ecab_93 98.70 100.00
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Download FASTA sequences of all ENSECAG00000020363 retrocopies