Parental gene:

TPT1, ENSECAG00000018348

Aliases:None
Description:tumor protein, translationally-controlled 1 [Source:HGNC Symbol;Acc:12022]
Organism:Horse (Equus caballus)
Coordinates:17:25228685..25232435(+)


>ENSECAG00000018348
CGGGACCTTATCAGCCATGATGAGATGTTCTCCGACATCTACAAGATCCGGGAGATCGCGGACGGGCTGTGCCTGGAGGT
GGAGGGGAAGATGGTCAGTAGGACAGAGGGTAACATTGATGACTCGCTCATTGGTGGAAATGCCTCCGCTGAAGGCCCCG
AGGGCGAAGGTACCGAAAGCACAGTAATCACTGGTGTTGATATTGTCATGAACCATCACTTGCAGGAAACCAGCTTCACA
AAAGAAGCCTACAAGAAGTACATCAAAGATTACATGAAATCAATCAAAGGCAAACTTGAAGAACAGAGACCAGAAAGAGT
AAAACCTTTTATGACAGGGGCTGCAGAACAAATCAAGCACATCCTTGCTAATTTCAAAAACTACCAGTTCTTTATTGGTG
AAAACATGAATCCAGATGGCATGGTTGCTCTGCTGGACTACCGTGAGGATGGTGTGACCCCGTATATGATTTTCTTTAAG
GATGGTTTAGAAATGGAGAAATGTTAA

Library Parental gene expression (RPM)
SRP021940_synovial_membrane 983 .36 RPM
SRP021940_embryo 722 .30 RPM
SRP021940_cerebellum 301 .10 RPM
SRP021940_testis 421 .26 RPM
SRP021940_placental_villous 911 .66 RPM
SRP021940_articular_cartilage 839 .70 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000006531 ortholog_one2many 2 retrogenes
retro_acar_156, retro_acar_58,
Ailuropoda melanoleuca ENSAMEG00000013022 ortholog_one2one 8 retrogenes
retro_amel_1153, retro_amel_1521, retro_amel_1593, retro_amel_1804, retro_amel_1878, retro_amel_472, retro_amel_569, retro_amel_969,
Canis familiaris ENSCAFG00000004533 ortholog_one2one 10 retrogenes
retro_cfam_1110, retro_cfam_1328, retro_cfam_1476, retro_cfam_1508, retro_cfam_1846, retro_cfam_254, retro_cfam_341, retro_cfam_483, retro_cfam_661, retro_cfam_777,
Dasypus novemcinctus ENSDNOG00000000653 ortholog_one2many 22 retrogenes
retro_dnov_1071, retro_dnov_1202, retro_dnov_1349, retro_dnov_1705, retro_dnov_2082, retro_dnov_2283, retro_dnov_2305, retro_dnov_237, retro_dnov_2412, retro_dnov_2531, retro_dnov_2687, retro_dnov_276, retro_dnov_342, retro_dnov_397, retro_dnov_417, retro_dnov_453, retro_dnov_71, retro_dnov_847, retro_dnov_870, retro_dnov_909, retro_dnov_934, retro_dnov_981,
Felis catus ENSFCAG00000002107 ortholog_one2one 8 retrogenes
retro_fcat_1366, retro_fcat_1544, retro_fcat_1996, retro_fcat_443, retro_fcat_553, retro_fcat_645, retro_fcat_735, retro_fcat_992,
Homo sapiens ENSG00000133112 ortholog_one2one 13 retrogenes
retro_hsap_1083, retro_hsap_2234, retro_hsap_2256, retro_hsap_2382, retro_hsap_2503, retro_hsap_3156, retro_hsap_3676, retro_hsap_3828, retro_hsap_3946, retro_hsap_4307, retro_hsap_4701, retro_hsap_4786, retro_hsap_678,
Gorilla gorilla ENSGGOG00000001684 ortholog_one2one 12 retrogenes
retro_ggor_1561, retro_ggor_1681, retro_ggor_1807, retro_ggor_2045, retro_ggor_2484, retro_ggor_2628, retro_ggor_2652, retro_ggor_2877, retro_ggor_2878, retro_ggor_2980, retro_ggor_584, retro_ggor_855,
Latimeria chalumnae ENSLACG00000004306 ortholog_one2many 2 retrogenes
retro_lcha_24, retro_lcha_34,
Microcebus murinus ENSMICG00000002027 ortholog_one2one 9 retrogenes
retro_mmur_102, retro_mmur_1060, retro_mmur_1163, retro_mmur_1627, retro_mmur_248, retro_mmur_318, retro_mmur_490, retro_mmur_641, retro_mmur_967,
Macaca mulatta ENSMMUG00000022979 ortholog_one2many 2 retrogenes
retro_mmul_158, retro_mmul_85,
Monodelphis domestica ENSMODG00000014940 possible_ortholog 2 retrogenes
retro_mdom_128, retro_mdom_9,
Mustela putorius furo ENSMPUG00000001640 ortholog_one2one 10 retrogenes
retro_mputfur_1043, retro_mputfur_30, retro_mputfur_364, retro_mputfur_565, retro_mputfur_574, retro_mputfur_582, retro_mputfur_677, retro_mputfur_870, retro_mputfur_960, retro_mputfur_967,
Procavia capensis ENSPCAG00000016228 possible_ortholog 3 retrogenes
retro_pcap_245, retro_pcap_351, retro_pcap_357,
Pongo abelii ENSPPYG00000005335 ortholog_one2one 5 retrogenes
retro_pabe_1958, retro_pabe_2626, retro_pabe_2809, retro_pabe_83, retro_pabe_900,
Sarcophilus harrisii ENSSHAG00000001545 possible_ortholog 1 retrogene
retro_shar_227,
Ictidomys tridecemlineatus ENSSTOG00000006931 ortholog_one2one 7 retrogenes
retro_itri_1192, retro_itri_146, retro_itri_266, retro_itri_325, retro_itri_612, retro_itri_700, retro_itri_999,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_337 56.25 64.88
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2. retro_ecab_686 74.14 68.45
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3. retro_ecab_727 80.58 61.31
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Download FASTA sequences of all ENSECAG00000018348 retrocopies