Parental gene: | SSRP1, ENSECAG00000016612 |
| Aliases: | None |
| Description: | structure specific recognition protein 1 [Source:HGNC Symbol;Acc:11327] |
| Organism: | Horse (Equus caballus) |
| Coordinates: | 12:17080228..17087060(-) |
>ENSECAG00000016612
ATGGCAGAAACACTGGAGTTCAACGACATCTATCAGGAGGTGAAAGGCTCCATGAATGATGGTCGGCTGAGGTTGAGCCG
CCAGGGCATCATCTTCAAGAATAGTAAGACGGGCAAAGTGGACAATATCCAGGCTGGGGAGTTGACGGAAGGCATCTGGC
GCCGTGTAGCTCTGGGCCATGGACTTAAACTGCTCACAAAAAATGGCCATGTCTACAAGTATGACGGCTTCCGAGAATCG
GAGTTTGAGAAACTCTCTGATTTCTTCAAAACTCACTATCGCCTTGAACTGATGGAGAAGGACCTATGTGTGAAGGGCTG
GAACTGGGGGACGGTGAAGTTTGGTGGGCAGCTGCTCTCCTTTGACATTGGCGACCAGCCGGTCTTCGAGATACCCCTCA
GCAATGTGTCCCAGTGCACCACAGGGAAGAATGAGGTGACACTGGAATTCCACCAGAACGATGATGCAGAGGTCTCTCTC
ATGGAGGTGCGCTTCTACGTGCCTCCCACCCAGGAGGATGGCGTGGACCCTGTTGAGGCCTTTGCCCAGAATGTGCTGTC
TAAGGCGGATGTGATCCAGGCCACTGGAGATGCCATCTGCATCTTCCGGGAGCTGCAGTGTCTGACTCCTCGAGGCCGTT
ATGACATTCGGATCTATCCCACCTTTCTGCACCTACACGGCAAGACCTTTGACTACAAGATACCATACACCACGGTACTG
CGTCTCTTTTTGCTGCCCCACAAGGACCAGCGCCAGATGTTCTTTGTGATCAGCCTGGATCCTCCCATCAAGCAGGGCCA
AACCCGTTACCACTTCCTGATCCTCCTCTTCTCCAAGGATGAGGACATCTCCTTGACTCTCAACATGAATGAGGAAGAGG
TAGAGAAGCGCTTTGAGGGGCGTCTCACCAAGAACATGTCGGGATCCCTGTACGAGATGGTCAGCCGGGTCATGAAAGCG
CTGGTCAACCGCAAGATCACAGTTCCAGGCAACTTCCAAGGGCACTCAGGGGCCCAGTGCATCACCTGCTCCTACAAGGC
CAGCTCGGGACTGCTGTACCCGCTGGAGCGGGGCTTCATCTACGTCCACAAGCCGCCAGTGCACATCCGCTTCGATGAGA
TCTCCTTTGTCAACTTTGCCCGCGGTACCACCACCACTCGTTCCTTTGACTTTGAAATCGAGACCAAGCAGGGCACTCAG
TACACCTTCAGTAGCATTGAGAGGGAGGAGTACGGGAAGCTGTTTGATTTTGTCAACGCAAAAAAGCTCAACATCAAAAA
CCGAGGATTGAAAGAGGGCATGAACCCAAACTACGACGAATATGCCGACTCTGATGAAGATCAGCATGATGCCTACTTGG
AGCGGATGAAGGAGGAGGGCAAGATCCGGGAAGAGAATGCCAATGACAGCAGCGATGACTCAGGAGAAGAAACCGATGAG
TCATTCAACCCAGGTGAAGAGGAGGAAGACGTGGCAGAGGAGTTTGACAGCAATGCCTCTGCTAGCTCCTCCAGTAATGA
GGGTGACAGTGACCGGGATGAGAAGAAACGGAAACAGCTTAAAAAGGCCAAGATGGCCAAAGATCGCAAGAGCCGCAAGA
AGCCTATGGAGGTGAAGAAGGGCAAGGACCCCAATGCCCCCAAGAGGCCCATGTCTGCCTACATGCTGTGGCTCAATGCC
AGCCGAGAGAAGATCAAGTCAGACCATCCTGGCATCAGTATCACTGATCTTTCCAAGAAGGCAGGCGAGATTTGGAAGGG
AATGTCCAAAGAGAAGAAAGAG
ATGGCAGAAACACTGGAGTTCAACGACATCTATCAGGAGGTGAAAGGCTCCATGAATGATGGTCGGCTGAGGTTGAGCCG
CCAGGGCATCATCTTCAAGAATAGTAAGACGGGCAAAGTGGACAATATCCAGGCTGGGGAGTTGACGGAAGGCATCTGGC
GCCGTGTAGCTCTGGGCCATGGACTTAAACTGCTCACAAAAAATGGCCATGTCTACAAGTATGACGGCTTCCGAGAATCG
GAGTTTGAGAAACTCTCTGATTTCTTCAAAACTCACTATCGCCTTGAACTGATGGAGAAGGACCTATGTGTGAAGGGCTG
GAACTGGGGGACGGTGAAGTTTGGTGGGCAGCTGCTCTCCTTTGACATTGGCGACCAGCCGGTCTTCGAGATACCCCTCA
GCAATGTGTCCCAGTGCACCACAGGGAAGAATGAGGTGACACTGGAATTCCACCAGAACGATGATGCAGAGGTCTCTCTC
ATGGAGGTGCGCTTCTACGTGCCTCCCACCCAGGAGGATGGCGTGGACCCTGTTGAGGCCTTTGCCCAGAATGTGCTGTC
TAAGGCGGATGTGATCCAGGCCACTGGAGATGCCATCTGCATCTTCCGGGAGCTGCAGTGTCTGACTCCTCGAGGCCGTT
ATGACATTCGGATCTATCCCACCTTTCTGCACCTACACGGCAAGACCTTTGACTACAAGATACCATACACCACGGTACTG
CGTCTCTTTTTGCTGCCCCACAAGGACCAGCGCCAGATGTTCTTTGTGATCAGCCTGGATCCTCCCATCAAGCAGGGCCA
AACCCGTTACCACTTCCTGATCCTCCTCTTCTCCAAGGATGAGGACATCTCCTTGACTCTCAACATGAATGAGGAAGAGG
TAGAGAAGCGCTTTGAGGGGCGTCTCACCAAGAACATGTCGGGATCCCTGTACGAGATGGTCAGCCGGGTCATGAAAGCG
CTGGTCAACCGCAAGATCACAGTTCCAGGCAACTTCCAAGGGCACTCAGGGGCCCAGTGCATCACCTGCTCCTACAAGGC
CAGCTCGGGACTGCTGTACCCGCTGGAGCGGGGCTTCATCTACGTCCACAAGCCGCCAGTGCACATCCGCTTCGATGAGA
TCTCCTTTGTCAACTTTGCCCGCGGTACCACCACCACTCGTTCCTTTGACTTTGAAATCGAGACCAAGCAGGGCACTCAG
TACACCTTCAGTAGCATTGAGAGGGAGGAGTACGGGAAGCTGTTTGATTTTGTCAACGCAAAAAAGCTCAACATCAAAAA
CCGAGGATTGAAAGAGGGCATGAACCCAAACTACGACGAATATGCCGACTCTGATGAAGATCAGCATGATGCCTACTTGG
AGCGGATGAAGGAGGAGGGCAAGATCCGGGAAGAGAATGCCAATGACAGCAGCGATGACTCAGGAGAAGAAACCGATGAG
TCATTCAACCCAGGTGAAGAGGAGGAAGACGTGGCAGAGGAGTTTGACAGCAATGCCTCTGCTAGCTCCTCCAGTAATGA
GGGTGACAGTGACCGGGATGAGAAGAAACGGAAACAGCTTAAAAAGGCCAAGATGGCCAAAGATCGCAAGAGCCGCAAGA
AGCCTATGGAGGTGAAGAAGGGCAAGGACCCCAATGCCCCCAAGAGGCCCATGTCTGCCTACATGCTGTGGCTCAATGCC
AGCCGAGAGAAGATCAAGTCAGACCATCCTGGCATCAGTATCACTGATCTTTCCAAGAAGGCAGGCGAGATTTGGAAGGG
AATGTCCAAAGAGAAGAAAGAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP021940_synovial_membrane | 76 .37 RPM |
| SRP021940_embryo | 229 .80 RPM |
| SRP021940_cerebellum | 96 .44 RPM |
| SRP021940_testis | 82 .36 RPM |
| SRP021940_placental_villous | 65 .05 RPM |
| SRP021940_articular_cartilage | 78 .86 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000000375 | ortholog_one2one | 1 retrogene | |
| Cavia porcellus | ENSCPOG00000000480 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ecab_516 | 67.02 | 62.29 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSECAG00000016612 retrocopies