Parental gene:

RHOC, ENSECAG00000010174

Aliases:None
Description:ras homolog family member C [Source:HGNC Symbol;Acc:669]
Organism:Horse (Equus caballus)
Coordinates:5:55820081..55824460(+)


>ENSECAG00000010174
ATGGCTGCGATCCGAAAGAAGCTGGTGATTGTGGGGGATGGGGCCTGTGGGAAGACTTGCCTCCTCATCGTCTTCAGCAA
GGATCAGTTCCCAGAGGTCTACGTCCCTACTGTCTTTGAGAACTACATCGCAGACATAGAGGTGGACGGCAAGCAGGTGG
AGCTGGCTTTGTGGGACACAGCAGGGCAGGAAGACTATGATCGCCTGCGGCCTCTCTCCTACCCAGACACGGACGTCATC
CTCATGTGCTTCTCCATTGACAGCCCCGACAGCCTGGAGAACATTCCTGAGAAATGGACCCCGGAGGTGAAGCACTTCTG
CCCCAATGTGCCCATCATCCTAGTGGGGAATAAGAAGGACCTGAGGCAAGATGAGCATACCAGGAGAGAGCTGGCCAAGA
TGAAGCAGGAGCCGGTTCGATCCGAGGAAGGCCGGGACATGGCGAACCGGATCAGTGCCTTTGGCTACCTCGAGTGCTCA
GCCAAGACCAAGGAGGGGGTGCGGGAGGTATTCGAGATGGCCACTAGGGCTGGCCTCCAGGTCCGCAAGAATAAGCGCCG
GAGGGGATGTCCCATCCTCTGA

Library Parental gene expression (RPM)
SRP021940_synovial_membrane 168 .39 RPM
SRP021940_embryo 118 .48 RPM
SRP021940_cerebellum 25 .14 RPM
SRP021940_testis 79 .61 RPM
SRP021940_placental_villous 197 .30 RPM
SRP021940_articular_cartilage 96 .93 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000014299 ortholog_one2one 1 retrogene
retro_btau_1171,
Canis familiaris ENSCAFG00000013413 ortholog_one2one 1 retrogene
retro_cfam_1152,
Callithrix jacchus ENSCJAG00000013657 ortholog_one2one 2 retrogenes
retro_cjac_1657, retro_cjac_2027,
Ficedula albicollis ENSFALG00000000736 ortholog_one2one 1 retrogene
retro_falb_11,
Gorilla gorilla ENSGGOG00000002741 ortholog_one2one 2 retrogenes
retro_ggor_18, retro_ggor_732,
Macropus eugenii ENSMEUG00000004807 possible_ortholog 1 retrogene
retro_meug_37,
Monodelphis domestica ENSMODG00000000981 ortholog_one2one 1 retrogene
retro_mdom_1245,
Otolemur garnettii ENSOGAG00000027678 ortholog_one2one 3 retrogenes
retro_ogar_2606, retro_ogar_3360, retro_ogar_58,
Sarcophilus harrisii ENSSHAG00000001981 ortholog_one2one 1 retrogene
retro_shar_455,
Taeniopygia guttata ENSTGUG00000017533 ortholog_one2one 1 retrogene
retro_tgut_11,
Tetraodon nigroviridis ENSTNIG00000015041 ortholog_one2many 1 retrogene
retro_tnig_2,
Xenopus tropicalis ENSXETG00000006898 ortholog_one2one 1 retrogene
retro_xtro_15,
Xiphophorus maculatus ENSXMAG00000008103 ortholog_one2one 1 retrogene
retro_xmac_13,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_112 85.79 98.45
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2. retro_ecab_257 55.46 59.59
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3. retro_ecab_932 66.67 53.89
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Download FASTA sequences of all ENSECAG00000010174 retrocopies