Parental gene: | PPIF, ENSECAG00000008796 |
| Aliases: | None |
| Description: | peptidylprolyl isomerase F [Source:HGNC Symbol;Acc:9259] |
| Organism: | Horse (Equus caballus) |
| Coordinates: | 1:66438185..66444075(+) |
>ENSECAG00000008796
TCTTCCTCCCGGAACCCGCTCGTGTACCTGGATGTGGGCGCCGACGGTCAAACGCTCGGCCGCGTGGTGCTGGAGCTGAA
CGCAGATGTTGTCCCAAAGACAGCAGAGAACTTCAGAGCCCTGTGCACTGGGGAGAAGGGCTTTGGTTACAAAGGCTCCA
CCTTTCACAGAGTGATTCCAGCCTTCATGTGCCAGGCAGGCGACTTCACCAACCACAATGGCACAGGGGGGAAGTCCATC
TATGGAAGCCGCTTTCCAGATGAGAACTTCACACTGAAGCACGTGGGACCAGGTGTCCTGTCCATGGCCAATGCAGGCCC
CAACACCAACGGCTCCCAGTTCTTCATTTGTACCATAAAGACAGACTGGTTAGATGGCAAACATGTTGTGTTTGGCCACG
TCAAAGAGGGCATGGATGTCGTGAAGAAAATAGAATCTTTTGGGTCCAAGAGTGGGAAGACATCCAAGAAGATTGTCATC
ACAGACTGCGGCCAGTTGAGCTAA
TCTTCCTCCCGGAACCCGCTCGTGTACCTGGATGTGGGCGCCGACGGTCAAACGCTCGGCCGCGTGGTGCTGGAGCTGAA
CGCAGATGTTGTCCCAAAGACAGCAGAGAACTTCAGAGCCCTGTGCACTGGGGAGAAGGGCTTTGGTTACAAAGGCTCCA
CCTTTCACAGAGTGATTCCAGCCTTCATGTGCCAGGCAGGCGACTTCACCAACCACAATGGCACAGGGGGGAAGTCCATC
TATGGAAGCCGCTTTCCAGATGAGAACTTCACACTGAAGCACGTGGGACCAGGTGTCCTGTCCATGGCCAATGCAGGCCC
CAACACCAACGGCTCCCAGTTCTTCATTTGTACCATAAAGACAGACTGGTTAGATGGCAAACATGTTGTGTTTGGCCACG
TCAAAGAGGGCATGGATGTCGTGAAGAAAATAGAATCTTTTGGGTCCAAGAGTGGGAAGACATCCAAGAAGATTGTCATC
ACAGACTGCGGCCAGTTGAGCTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP021940_synovial_membrane | 4 .12 RPM |
| SRP021940_embryo | 8 .75 RPM |
| SRP021940_cerebellum | 9 .56 RPM |
| SRP021940_testis | 2 .62 RPM |
| SRP021940_placental_villous | 1 .78 RPM |
| SRP021940_articular_cartilage | 0 .83 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Homo sapiens | ENSG00000108179 | ortholog_one2one | 1 retrogene | |
| Microcebus murinus | ENSMICG00000007086 | ortholog_one2one | 8 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000010567 | ortholog_one2one | 1 retrogene | |
| Procavia capensis | ENSPCAG00000009406 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000002669 | ortholog_one2one | 1 retrogene | |
| Pteropus vampyrus | ENSPVAG00000001713 | ortholog_one2one | 2 retrogenes | |
| Tupaia belangeri | ENSTBEG00000015457 | ortholog_one2one | 1 retrogene | |
| Xenopus tropicalis | ENSXETG00000018981 | possible_ortholog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ecab_507 | 54.44 | 98.80 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ecab_649 | 56.86 | 91.02 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ecab_732 | 62.00 | 88.62 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSECAG00000008796 retrocopies