Parental gene:

C6orf52, ENSECAG00000008229

Aliases:None
Description:chromosome 6 open reading frame 52 [Source:HGNC Symbol;Acc:20881]
Organism:Horse (Equus caballus)
Coordinates:20:10579178..10586836(-)


>ENSECAG00000008229
ATGGCGGGACAGGAGAGTTTTGCACATTTTGGCATAGCTCAACAAAATAATTACTACTGGTACTGGCAAAGCAGAAATCA
TCCTTACTTGGTGAAGCCCGAGTTCCAGCCCTCCCAAGGTTACCCTTTTGGCCACTGGTCTGAGCACCAGCACAGCTGTT
GCTCCCTTCCTGACTACAGCAGTGGCTGTGCAGTGGTTGGAAGTGGACACAGCTGCCTCTCTGTGTGTGCGACCTCTGGA
CACCCAGCTGAAACTCTGGTCACCCAAGAGGAAACCACATCTCTGGCTGAAAACCGAGATGAAGACCCAATAGCAGATCC
AAATCTTCATTTGAATATTGAGGAAAAAGAGTTTATGATGAAAAGTGAAGAACTCTACGACTCTCTCATGAATTGCCACT
GGCAGCCTTCAGATACAGTTCACTCTAAAATCCCAGATGAGTCCTCAAAG

Library Parental gene expression (RPM)
SRP021940_synovial_membrane 0 .33 RPM
SRP021940_embryo 1 .53 RPM
SRP021940_cerebellum 1 .92 RPM
SRP021940_testis 0 .83 RPM
SRP021940_placental_villous 0 .24 RPM
SRP021940_articular_cartilage 0 .89 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000002583 ortholog_one2one 1 retrogene
retro_amel_1114,
Canis familiaris ENSCAFG00000030234 ortholog_one2one 1 retrogene
retro_cfam_1098,
Choloepus hoffmanni ENSCHOG00000010768 ortholog_one2one 2 retrogenes
retro_chof_2530, retro_chof_70,
Equus caballus ENSECAG00000012980 within_species_paralog 1 retrogene
retro_ecab_452,
Monodelphis domestica ENSMODG00000028324 ortholog_one2one 12 retrogenes
retro_mdom_1372, retro_mdom_2019, retro_mdom_322, retro_mdom_336, retro_mdom_453, retro_mdom_492, retro_mdom_513, retro_mdom_523, retro_mdom_534, retro_mdom_616, retro_mdom_746, retro_mdom_894,
Tursiops truncatus ENSTTRG00000003650 ortholog_one2one 1 retrogene
retro_ttru_927,
Vicugna pacos ENSVPAG00000003001 ortholog_one2one 2 retrogenes
retro_vpac_198, retro_vpac_609,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_684 56.49 99.33
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2. retro_ecab_792 62.93 76.00
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Download FASTA sequences of all ENSECAG00000008229 retrocopies