Parental gene: | STX16-NPEPL1, ENSDNOG00000024609 |
| Aliases: | None |
| Description: | STX16-NPEPL1 readthrough (NMD candidate) [Source:HGNC Symbol;Acc:41993] |
| Organism: | Armadillo (Dasypus novemcinctus) |
| Coordinates: | GeneScaffold_2568:479..44013(+) |
>ENSDNOG00000024609
GACATGGCCACCAGGCGTTTAACCGACGCTTTCTTGTTGTTGCGGAATAATTCCATCCAAAACCGGCAGCTGTTAGCCGA
GCAAGTGAGTAGTCACACCACCTCCAGCCCTCTGCATTCACGTAGCATTGCTGCGACCCCGGATGGGCTTGCTGATGACC
GTATGGCACTGGTGTCAGGCATTAGCTCGGATCCAGAAGCAGCAATTGGTGTGACAAAACGGCTGCCTCCTAAATGGGTG
GAGGGAGTGGATGGAATACAGTATGATGTTGGCCGGATTAAACAGAAGATGAAAGAATTAGCCAGCCTTCACGACAAGCA
TTTAAACAGACCCACCCTGGATGACAGCAGTGAGGAAGAGCATGCCATTGAAATCACCACACAAGAGATCACTCAGCTCT
TCCACAGAGGCCAGCGTGCGGTGCAAGCACTGACCAGCCGGGCCCGCGGGACCTGCTCCGAGCAGGAGGAGCGGCTCCTT
CGCAACGTGGTGACTTCCCTGGCTCAGGCCCTGCAGGAGCTGTCCACCAGCTTCCGCCATGCTCAGTCGGGCTATCTCNN
NNGCATGAAGAATCGAGAGGAAAGATCCCAGCATTTTTTTGATACATCAGTACCACTAATGGATGATGGAGACGATAATA
CTCTTTATGATCGGGGTTTTACAGATGACCAGTTAGTGCTGGTGGAGCAGAACACGCTGATGGTGGAGGAGAGGGAGCGG
GAGATCCGCCAGATTGTCCAGTCCATCTCTGACCTGAACGAGATCTTTAGGGACCTGGGAGTAATGATTGTCGAACAGNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAACAGTCCTGTGTCAAAGAAGATGGCTTGAAACAGCTTCACAAGTTCT
CCCACCTGGAATGCCTTTCTTCCTATCTCATCTTTCAGGGCACGGCTGTCACTGGCCCTCTAGAAAGGACACCCGGCTGT
CGCAGTCTCCAGCTAGACTGCCAGGCACCACCGCTTTGCCATGTATTTGCAAACAGAAACAACTGTTTTTTCCCAGGCAC
GGGAGGAAAACAGAAAAGGCCCGCCTTCAGCTTGCTG
GACATGGCCACCAGGCGTTTAACCGACGCTTTCTTGTTGTTGCGGAATAATTCCATCCAAAACCGGCAGCTGTTAGCCGA
GCAAGTGAGTAGTCACACCACCTCCAGCCCTCTGCATTCACGTAGCATTGCTGCGACCCCGGATGGGCTTGCTGATGACC
GTATGGCACTGGTGTCAGGCATTAGCTCGGATCCAGAAGCAGCAATTGGTGTGACAAAACGGCTGCCTCCTAAATGGGTG
GAGGGAGTGGATGGAATACAGTATGATGTTGGCCGGATTAAACAGAAGATGAAAGAATTAGCCAGCCTTCACGACAAGCA
TTTAAACAGACCCACCCTGGATGACAGCAGTGAGGAAGAGCATGCCATTGAAATCACCACACAAGAGATCACTCAGCTCT
TCCACAGAGGCCAGCGTGCGGTGCAAGCACTGACCAGCCGGGCCCGCGGGACCTGCTCCGAGCAGGAGGAGCGGCTCCTT
CGCAACGTGGTGACTTCCCTGGCTCAGGCCCTGCAGGAGCTGTCCACCAGCTTCCGCCATGCTCAGTCGGGCTATCTCNN
NNGCATGAAGAATCGAGAGGAAAGATCCCAGCATTTTTTTGATACATCAGTACCACTAATGGATGATGGAGACGATAATA
CTCTTTATGATCGGGGTTTTACAGATGACCAGTTAGTGCTGGTGGAGCAGAACACGCTGATGGTGGAGGAGAGGGAGCGG
GAGATCCGCCAGATTGTCCAGTCCATCTCTGACCTGAACGAGATCTTTAGGGACCTGGGAGTAATGATTGTCGAACAGNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAACAGTCCTGTGTCAAAGAAGATGGCTTGAAACAGCTTCACAAGTTCT
CCCACCTGGAATGCCTTTCTTCCTATCTCATCTTTCAGGGCACGGCTGTCACTGGCCCTCTAGAAAGGACACCCGGCTGT
CGCAGTCTCCAGCTAGACTGCCAGGCACCACCGCTTTGCCATGTATTTGCAAACAGAAACAACTGTTTTTTCCCAGGCAC
GGGAGGAAAACAGAAAAGGCCCGCCTTCAGCTTGCTG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP012922_ascending_colon | 33 .06 RPM |
| SRP012922_cerebellum | 29 .83 RPM |
| SRP012922_heart | 10 .44 RPM |
| SRP012922_kidney | 6 .57 RPM |
| SRP012922_liver | 11 .30 RPM |
| SRP012922_lung | 21 .53 RPM |
| SRP012922_quadricep_muscle | 15 .75 RPM |
| SRP012922_spleen | 32 .28 RPM |
No homologs available
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_dnov_2292 | 58.90 | 59.61 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSDNOG00000024609 retrocopies