Parental gene:

PPP2CB, ENSDNOG00000010906

Aliases:None
Description:protein phosphatase 2, catalytic subunit, beta isozyme [Source:HGNC Symbol;Acc:9300]
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:GeneScaffold_1414:6617..37234(-)


>ENSDNOG00000010906
ATGGACGACAAGGCGTTCACCAAGGAGCTGGACCAGTGGGTGGAGCAGCTGAACGAGTGTAAGCAGCTGAACGAGAACCA
AGTGCGGACCCTGTGCGAGAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGCGTTA
TCCAGAGCGCATCACAATATTGAGAGGAAACCATGAAAGCCGACAAATTACCCAAGTATATGGCTTTTATGATGAATGTC
TACGAAAGTATGGAAATGCCAATGTGTGGAAATATTTCACAGATCTTTTTGATTATCTTCCACTTACAGCTTTAGTAGAT
GGACAGATATTCTGCCTCCATGGTGGCCTCTCTCCATCCATAGATACACTGGATCATATAAGGGCCCTGGATCGTTTACA
AGAAGTTCCACATGAGGGCCCAATGTGTGATTTGTTATGGTCAGATCCAGATGATCGTGGTGGGTGGGGCATTTCTCCAC
GTGGTGCTGGCTACACATTTGGACAAGACATTTCTGAAACATTTAACCATGCCAATGGCCTCACGCTGGTTTCTCGCGCT
CACCAACTTGTAATGGAGGGATATAATTGGTGTCATGATCGTAATGTGGTTACTATCTTCAGTGCACCCAATTATTGTTA
TCGTTGTGGGAACCAGGCTGCTATCATGGAATTAGATGATACTTTAAAATATTCCTTCCTTCAGTTTGACCCAGCACCTC
GTCGTGGAGAACCTCATGTTACCCGGCGCACTCCAGACTACTTCCTGTAA

Library Parental gene expression (RPM)
SRP012922_ascending_colon 70 .01 RPM
SRP012922_cerebellum 52 .38 RPM
SRP012922_heart 21 .58 RPM
SRP012922_kidney 50 .93 RPM
SRP012922_liver 17 .49 RPM
SRP012922_lung 76 .51 RPM
SRP012922_quadricep_muscle 41 .02 RPM
SRP012922_spleen 54 .14 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000001615 ortholog_one2one 1 retrogene
retro_amel_663,
Bos taurus ENSBTAG00000009245 ortholog_one2one 3 retrogenes
retro_btau_1199, retro_btau_1750, retro_btau_704,
Callithrix jacchus ENSCJAG00000012460 ortholog_one2one 1 retrogene
retro_cjac_985,
Dasypus novemcinctus ENSDNOG00000013011 within_species_paralog 4 retrogenes
retro_dnov_1025, retro_dnov_1844, retro_dnov_2100, retro_dnov_2122,
Echinops telfairi ENSETEG00000018123 ortholog_one2one 4 retrogenes
retro_etel_1607, retro_etel_1923, retro_etel_680, retro_etel_702,
Felis catus ENSFCAG00000025139 ortholog_one2one 1 retrogene
retro_fcat_1884,
Homo sapiens ENSG00000104695 ortholog_one2one 1 retrogene
retro_hsap_1631,
Gorilla gorilla ENSGGOG00000013978 ortholog_one2one 1 retrogene
retro_ggor_380,
Macaca mulatta ENSMMUG00000020819 ortholog_one2one 1 retrogene
retro_mmul_484,
Monodelphis domestica ENSMODG00000019001 ortholog_one2many 2 retrogenes
retro_mdom_192, retro_mdom_632,
Oryctolagus cuniculus ENSOCUG00000005230 ortholog_one2one 1 retrogene
retro_ocun_1697,
Otolemur garnettii ENSOGAG00000002488 ortholog_one2one 1 retrogene
retro_ogar_3188,
Pongo abelii ENSPPYG00000018491 ortholog_one2one 1 retrogene
retro_pabe_335,
Tursiops truncatus ENSTTRG00000000102 ortholog_one2one 1 retrogene
retro_ttru_1576,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_2211 59.12 58.25
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Download FASTA sequences of all ENSDNOG00000010906 retrocopies