Parental gene:

ARF1, ENSDNOG00000010454

Aliases:None
Description:ADP-ribosylation factor 1 [Source:HGNC Symbol;Acc:652]
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:scaffold_32853:5796..8227(+)


>ENSDNOG00000010454
ATGGGGAATATTTTTGCTAACCTCTTCAAGGGCCTTTTTGGCAAAAAAGAAATGCGCATTCTCATGGTTGGCCTGGATGC
TGCAGGAAAGACTACTATTTTGTACAAACTGAAACTTGGTGAAATTGTCACTACTATTCCTACTATCGGTTTCAACGTGG
AAACTGTAGAATACAAAAACATCAGCTTCACAGTGTGGGACGTGGGTGGCCAGGACAAGATCCGGCCTCTGTGGCGCCAC
TACTTCCAGAACACACAAGGTCTCATCTTTGTGGTCGACAGCAATGACCGAGAACGTGTGAACGAGGCCCGTGAAGAGCT
CATGAGGATGTTGGCAGAAGACGAGCTCAGGGATGCCGTCTTACTAGTGTTTGCTAACAAGCAGGATCTTCCCAATGCTA
TGAACGCTGCTGAAATCACAGATAAACTGGGATTGCATTCTCTGCGCCACAGAAACTGGTACATTCAGGCCACCTGTGCC
ACCAGTGGGGACGGGCTTTACGAAGGACTGGACTGGTTGTCCAATCAGCTCCGGAACCAGAAGTGA

Library Parental gene expression (RPM)
SRP012922_ascending_colon 138 .27 RPM
SRP012922_cerebellum 67 .63 RPM
SRP012922_heart 28 .77 RPM
SRP012922_kidney 52 .57 RPM
SRP012922_liver 38 .24 RPM
SRP012922_lung 83 .85 RPM
SRP012922_quadricep_muscle 34 .96 RPM
SRP012922_spleen 85 .50 RPM



Species Parental gene accession Homology type Retrogenes number
Anas platyrhynchos ENSAPLG00000004509 ortholog_one2one 1 retrogene
retro_apla_4,
Callithrix jacchus ENSCJAG00000016671 possible_ortholog 10 retrogenes
retro_cjac_1295, retro_cjac_1691, retro_cjac_1719, retro_cjac_2189, retro_cjac_2896, retro_cjac_300, retro_cjac_3181, retro_cjac_3311, retro_cjac_3335, retro_cjac_390,
Ciona savignyi ENSCSAVG00000007011 possible_ortholog 1 retrogene
retro_csav_2,
Dasypus novemcinctus ENSDNOG00000013387 within_species_paralog 5 retrogenes
retro_dnov_1132, retro_dnov_1251, retro_dnov_1260, retro_dnov_1407, retro_dnov_2319,
Erinaceus europaeus ENSEEUG00000004638 ortholog_one2one 4 retrogenes
retro_eeur_328, retro_eeur_660, retro_eeur_684, retro_eeur_76,
Gallus gallus ENSGALG00000005393 ortholog_one2one 1 retrogene
retro_ggal_7,
Latimeria chalumnae ENSLACG00000019009 possible_ortholog 1 retrogene
retro_lcha_10,
Myotis lucifugus ENSMLUG00000007020 ortholog_one2one 6 retrogenes
retro_mluc_1631, retro_mluc_242, retro_mluc_2605, retro_mluc_428, retro_mluc_511, retro_mluc_876,
Macaca mulatta ENSMMUG00000002792 possible_ortholog 3 retrogenes
retro_mmul_237, retro_mmul_541, retro_mmul_810,
Oryctolagus cuniculus ENSOCUG00000023645 possible_ortholog 2 retrogenes
retro_ocun_1137, retro_ocun_247,
Procavia capensis ENSPCAG00000014202 possible_ortholog 2 retrogenes
retro_pcap_15, retro_pcap_23,
Pan troglodytes ENSPTRG00000002066 ortholog_one2one 2 retrogenes
retro_ptro_112, retro_ptro_5,
Tetraodon nigroviridis ENSTNIG00000011685 possible_ortholog 1 retrogene
retro_tnig_19,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_26 97.24 100.00
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2. retro_dnov_2375 67.94 71.82
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3. retro_dnov_2459 98.90 100.00
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Download FASTA sequences of all ENSDNOG00000010454 retrocopies