Parental gene: | KHDRBS1, ENSDNOG00000003761 |
| Aliases: | None |
| Description: | KH domain containing, RNA binding, signal transduction associated 1 [Source:HGNC Symbol;Acc:18116] |
| Organism: | Armadillo (Dasypus novemcinctus) |
| Coordinates: | GeneScaffold_2437:785..27597(+) |
>ENSDNOG00000003761
ATGCAGCGCCGGGACGACCCCGCTGCGCGCATGATCCGGTCCTCGGGCCGCAGTGGCTCCATGGACCCTTCAGGTGCCCA
CTCTTCAGTGCGTCAGGCGCCGTCTCGGCAGCCGCCGCTGTCTCACCGGTCCCGGGGAGGCGGAGGAGGATCCCGGGGGG
GCGCTCGGGCCTCGCCCGCCACGCAGCGCACGCTGCTGCCGCCCTCGGCCACGGGTCCCGACGCGACAGTGGGCGGTCCG
GCGCCGCCGCTGCTGCCCCTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNTTTAATTTTGTGGGAAAGATTCTTGGACCACAAGGGAATACAATCAAAAGACTGCA
AGAAGAGACTGGTGCAAAGATCTCTGTCTTGGGAAAGGGCTCAATGAGAGACAAAGCCAAGGAGGAAGAGCTACGCAAAG
GTGGAGACCCCAAATATGCCCACTTGAATATGGATCTGCATGTTTTCATTGAAGTCTTTGGACCCCCATGTGAGGCTTAT
GCTCTTATGGCCCATGCTATGGAGGAAGTCAAGAAATTTCTAGTACCAGATATGATGGATGATATCTGCCAGGAACAATT
TCTAGAGCTGTCCTACTTGAATGGAGTACCTGAGCCCCCTCGTGGACGTGGGGTGCCAGTGAGAGGCCGAGGAACCGCAC
CTCCCCCTCCACCTGTTCCTAGGGGCCGTGGTGTTGGACCACCTCGGGGGGCTCTGGTGCGGGGTACACCAGTGAGAGGA
GCCATCACCAGAGGTACCACTGTGACTCGTGGAGTGCCACCCCCACCTACTGTGAGGGGTGCTCCAGCACCAAGAGCACG
GACAACAGGCATCCAGAGAATACCTCTGCCTCCACCCCCTGCACCAGAAACATATGAAGAATATGGATATGATGATACAT
ATGCTGAACAGAGTTATGAAGGCTACGAAGGGTATTACAGCCAGAGCCAAGGGGACTCAGAATATTATGACTATGGACAT
GGGGAGGTTCAAGATTCTTACGAAGCTTATGGCCAAGACGACTGGAATGGGACCAGGCCATCGCTGAAGGCCCCTCCAGC
TAGGCCAGTGAAGGGAGCATACAGAGAGCACCCATATGGACGTTATTAA
ATGCAGCGCCGGGACGACCCCGCTGCGCGCATGATCCGGTCCTCGGGCCGCAGTGGCTCCATGGACCCTTCAGGTGCCCA
CTCTTCAGTGCGTCAGGCGCCGTCTCGGCAGCCGCCGCTGTCTCACCGGTCCCGGGGAGGCGGAGGAGGATCCCGGGGGG
GCGCTCGGGCCTCGCCCGCCACGCAGCGCACGCTGCTGCCGCCCTCGGCCACGGGTCCCGACGCGACAGTGGGCGGTCCG
GCGCCGCCGCTGCTGCCCCTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNTTTAATTTTGTGGGAAAGATTCTTGGACCACAAGGGAATACAATCAAAAGACTGCA
AGAAGAGACTGGTGCAAAGATCTCTGTCTTGGGAAAGGGCTCAATGAGAGACAAAGCCAAGGAGGAAGAGCTACGCAAAG
GTGGAGACCCCAAATATGCCCACTTGAATATGGATCTGCATGTTTTCATTGAAGTCTTTGGACCCCCATGTGAGGCTTAT
GCTCTTATGGCCCATGCTATGGAGGAAGTCAAGAAATTTCTAGTACCAGATATGATGGATGATATCTGCCAGGAACAATT
TCTAGAGCTGTCCTACTTGAATGGAGTACCTGAGCCCCCTCGTGGACGTGGGGTGCCAGTGAGAGGCCGAGGAACCGCAC
CTCCCCCTCCACCTGTTCCTAGGGGCCGTGGTGTTGGACCACCTCGGGGGGCTCTGGTGCGGGGTACACCAGTGAGAGGA
GCCATCACCAGAGGTACCACTGTGACTCGTGGAGTGCCACCCCCACCTACTGTGAGGGGTGCTCCAGCACCAAGAGCACG
GACAACAGGCATCCAGAGAATACCTCTGCCTCCACCCCCTGCACCAGAAACATATGAAGAATATGGATATGATGATACAT
ATGCTGAACAGAGTTATGAAGGCTACGAAGGGTATTACAGCCAGAGCCAAGGGGACTCAGAATATTATGACTATGGACAT
GGGGAGGTTCAAGATTCTTACGAAGCTTATGGCCAAGACGACTGGAATGGGACCAGGCCATCGCTGAAGGCCCCTCCAGC
TAGGCCAGTGAAGGGAGCATACAGAGAGCACCCATATGGACGTTATTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP012922_ascending_colon | 92 .57 RPM |
| SRP012922_cerebellum | 83 .03 RPM |
| SRP012922_heart | 20 .19 RPM |
| SRP012922_kidney | 30 .94 RPM |
| SRP012922_liver | 26 .32 RPM |
| SRP012922_lung | 78 .96 RPM |
| SRP012922_quadricep_muscle | 25 .10 RPM |
| SRP012922_spleen | 94 .66 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000006973 | possible_ortholog | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000006580 | possible_ortholog | 1 retrogene | |
| Dasypus novemcinctus | ENSDNOG00000010878 | within_species_paralog | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_dnov_2549 | 62.64 | 60.86 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSDNOG00000003761 retrocopies