Parental gene:

C9ORF78, ENSCPOG00000009285

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_27:2936625..2940820(+)


>ENSCPOG00000009285
ATGCCGGTCACCGGGAAGACCTTCCGCCGGCGCCGGGCCGACTCTGAGTCGGAGGAAGATGAGCAGGACTCCGAGGAGGT
TAGATTGAAGTTGGAGGAGACCCGAGAGGTCCAGAACTTAAGAAAGAGGCCCAACGGGGTGAGTGCTGCCGCCCTGCTGG
TGGGTGAGAAGGTGCAGGAAGAGACCACGCTAGTGGATAACCCTACCCATATGAAGACGGGAGGCATGGTGGACATGAAG
AAGCTTAAGGAAAGGGGCAAAGATAAGATCAGTGAGGAAGAAGACCTGCACCTGGGGACATCGTTTTCCGCAGAAACCAA
CCGAAGGGACGAGGATGCAGACATGATGAAGTACATCGAGACAGAGCTGAAGAAGAGGAAGGGCATCGTGGAGCATGAGG
AACAGAAGGTGAAGCCCAGGAATGCCGAGGACTGTCTGTACGAGCTCCCCGAGAGCATCCGCGTAGCCTCAGCCAAGAAG
ACAGAGGAGATGCTGTCCAACCAAATGCTGAGCGGCATCCCCGAAGTGGACCTGGGCATTGATGCCAAGATCAAAAACAT
CATCTCCACGGAGGATGCCAAGGCCCGCCTGCTGGCAGAACAGCAGAACAAGAAGAAGGACAGCGAGACGTCCTTTGTGC
CCACCAACATGGCCGTGAACTACGTGCAGCACAACCGCTTTTATCATGAGGAGCTCAATGCCCCCATCCGGAGGAACAAG
GAGGAGCCCAAGGCACGGCCCCTGCGAGTGGGCGACACGGAGAAGCCGGAGCCCGAGCGGTCCCCGCCTAACCGCAAGCG
GCCAGCTAACGAAAAAGCCACTGATGACTACCACTACGAGAAGTTTAAGAAAATGAACAGGCGGTACTGA

Library Parental gene expression (RPM)
SRP017611_liver 17 .67 RPM
SRP017611_kidney 23 .97 RPM
SRP017611_brain 23 .70 RPM
SRP040447_lung 33 .24 RPM
SRP040447_skeletal_muscle 22 .46 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000020307 ortholog_one2one 1 retrogene
retro_btau_1138,
Canis familiaris ENSCAFG00000019979 ortholog_one2many 1 retrogene
retro_cfam_116,
Choloepus hoffmanni ENSCHOG00000013895 ortholog_one2one 3 retrogenes
retro_chof_1103, retro_chof_1747, retro_chof_978,
Equus caballus ENSECAG00000018958 ortholog_one2one 1 retrogene
retro_ecab_174,
Gorilla gorilla ENSGGOG00000013358 possible_ortholog 1 retrogene
retro_ggor_1990,
Macropus eugenii ENSMEUG00000010524 ortholog_one2many 3 retrogenes
retro_meug_1046, retro_meug_1241, retro_meug_508,
Microcebus murinus ENSMICG00000009596 ortholog_one2one 1 retrogene
retro_mmur_1466,
Monodelphis domestica ENSMODG00000006832 ortholog_one2one 1 retrogene
retro_mdom_518,
Mus musculus ENSMUSG00000026851 ortholog_one2one 1 retrogene
retro_mmus_2978,
Otolemur garnettii ENSOGAG00000009770 possible_ortholog 1 retrogene
retro_ogar_1015,
Pongo abelii ENSPPYG00000019685 possible_ortholog 1 retrogene
retro_pabe_2426,
Sarcophilus harrisii ENSSHAG00000012313 ortholog_one2one 1 retrogene
retro_shar_746,
Ictidomys tridecemlineatus ENSSTOG00000020630 ortholog_one2one 1 retrogene
retro_itri_1783,
Tupaia belangeri ENSTBEG00000013115 ortholog_one2one 1 retrogene
retro_tbel_514,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_712 53.25 57.79
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Download FASTA sequences of all ENSCPOG00000009285 retrocopies