Parental gene: | ENSCPOG00000005570 |
| Aliases: | None |
| Description: | None |
| Organism: | Guinea Pig (Cavia porcellus) |
| Coordinates: | scaffold_6:41764570..41779942(+) |
>ENSCPOG00000005570
ATGAAATCCAGTCCTGCCATCCAAGCTGCCATTGACCTCACAGCGGGGGCTGCAGGGGGCACCGCATGTGTACTGACCGG
GCAGCCCTTCGACACCATGAAGGTGAAGATGCAGACGTTCCCTGACCTGTACCGGGGCCTCACCGACTGCTGCCTGAAGA
CCTACTCACAGGTGGGCTTCCGTGGCTTCTACAAGGGCACCAGCCCAGCGCTGATTGCCAACATCGCCGAGAACTCGGTG
CTCTTCATGTGCTATGGCTTTTGCCAGCAGCTGGTGCGGAGAGTGGTTGGACTGGACAGGAAAGCAAAGCTCAGTGACCT
GCAGAATGCAGCCGCGGGATCCGTGGCCTCCGCCTTTGCGGCCCTGGTGCTGTGCCCCACGGAGCTTGTGAAGTGCCGGC
TGCAGACCATGTTCGAAATGGAGACGTCAGGAAAGATAACCAGAAGCCAGAATACAGTTTGGTCTGTCGTGAAAAGTATC
CTTAGGAAGGATGGTCCCCTGGGCTTCTACCACGGACTCTCAAGCACCTTACTGCGGGAAGTACCAGGCTATTTTTTCTT
CTTTGGAGGCTATGAACTGAGCCGATCATTTTTGGCATCAGGGAGATCAAAAGATGAACTAGGTCCTGTCCCTTTGATGT
TAAGCGGTGGAGTTGGTGGAATTTGCCTGTGGCTTGCTGTATACCCAGTGGATTGTGTCAAATCCAGAATTCAAATCCTT
TCTATGTCTGGGAAACAGGCAGGATTTATTGGAACCCTTCTAAGTGTTGTGAGAAATGAAGGAATAGCAACTTTGTATTC
CGGACTGAAACCAACCATGATTCGAGCCTTCCCTGCCAATGGCGCACTATTTTTGGCCTACGAATACAGCAGGAAGTTGA
TGATGGGCCAGCTGGAAGCCTTCTGA
ATGAAATCCAGTCCTGCCATCCAAGCTGCCATTGACCTCACAGCGGGGGCTGCAGGGGGCACCGCATGTGTACTGACCGG
GCAGCCCTTCGACACCATGAAGGTGAAGATGCAGACGTTCCCTGACCTGTACCGGGGCCTCACCGACTGCTGCCTGAAGA
CCTACTCACAGGTGGGCTTCCGTGGCTTCTACAAGGGCACCAGCCCAGCGCTGATTGCCAACATCGCCGAGAACTCGGTG
CTCTTCATGTGCTATGGCTTTTGCCAGCAGCTGGTGCGGAGAGTGGTTGGACTGGACAGGAAAGCAAAGCTCAGTGACCT
GCAGAATGCAGCCGCGGGATCCGTGGCCTCCGCCTTTGCGGCCCTGGTGCTGTGCCCCACGGAGCTTGTGAAGTGCCGGC
TGCAGACCATGTTCGAAATGGAGACGTCAGGAAAGATAACCAGAAGCCAGAATACAGTTTGGTCTGTCGTGAAAAGTATC
CTTAGGAAGGATGGTCCCCTGGGCTTCTACCACGGACTCTCAAGCACCTTACTGCGGGAAGTACCAGGCTATTTTTTCTT
CTTTGGAGGCTATGAACTGAGCCGATCATTTTTGGCATCAGGGAGATCAAAAGATGAACTAGGTCCTGTCCCTTTGATGT
TAAGCGGTGGAGTTGGTGGAATTTGCCTGTGGCTTGCTGTATACCCAGTGGATTGTGTCAAATCCAGAATTCAAATCCTT
TCTATGTCTGGGAAACAGGCAGGATTTATTGGAACCCTTCTAAGTGTTGTGAGAAATGAAGGAATAGCAACTTTGTATTC
CGGACTGAAACCAACCATGATTCGAGCCTTCCCTGCCAATGGCGCACTATTTTTGGCCTACGAATACAGCAGGAAGTTGA
TGATGGGCCAGCTGGAAGCCTTCTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 44 .92 RPM |
| SRP017611_kidney | 11 .83 RPM |
| SRP017611_brain | 5 .00 RPM |
| SRP040447_lung | 5 .35 RPM |
| SRP040447_skeletal_muscle | 5 .48 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000017797 | ortholog_many2many | 1 retrogene | |
| Equus caballus | ENSECAG00000007666 | possible_ortholog | 1 retrogene | |
| Homo sapiens | ENSG00000102743 | ortholog_one2many | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000025261 | ortholog_one2many | 1 retrogene | |
| Microcebus murinus | ENSMICG00000007218 | ortholog_one2many | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000022585 | ortholog_one2many | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000001185 | ortholog_one2many | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000009380 | ortholog_one2many | 1 retrogene | |
| Pongo abelii | ENSPPYG00000005307 | ortholog_one2many | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000005809 | ortholog_one2many | 1 retrogene | |
| Pteropus vampyrus | ENSPVAG00000010393 | possible_ortholog | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000007840 | ortholog_one2many | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000017239 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cpor_105 | 99.34 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cpor_107 | 78.74 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCPOG00000005570 retrocopies