Parental gene:

SKP1, ENSCPOG00000005164

Aliases:None
Description:S-phase kinase-associated protein 1 [Source:UniProtKB/Swiss-Prot;Acc:P63209]
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_81:3150948..3174137(-)


>ENSCPOG00000005164
ATGCCTTCAATTAAGTTGCAGAGTTCTGATGGAGAGATATTTGAAGTTGATGTTGAAATTGCCAAACAATCTGTGACAAT
CAAGACCATGTTGGAAGATTTGGGAATGGATGATGAAGGAGATGATGACCCAGTTCTACCAAACGTTAATGCAGCGATAT
TAAAAAAGGTCATTCAGTGGTGTACCCACCACAAGGATGACCCCCCTCCTCCTGAGGATGATGAGAACAAAGAAAAGCGA
ACAGATGATATCCCTGTTTGGGACCAAGAATTCCTGAAAGTTGACCAAGGAACCCTTTTTGAACTTATTCTGGCAGCAAA
CTACCTAGACATCAAAGGTTTGCTTGATGTTACATGCAAGACTGTTGCCAATATGATCAAGGGGAAAACTCCTGAGGAGA
TTCGCAAGACTTTTAATATCAAAAATGACTTCACTGAAGAGGAGGAAGCCCAGGTACGCAAGGAAAACCAGTGGTGTGAA
GAGAAGTGA

Library Parental gene expression (RPM)
SRP017611_liver 181 .81 RPM
SRP017611_kidney 228 .43 RPM
SRP017611_brain 191 .07 RPM
SRP040447_lung 157 .83 RPM
SRP040447_skeletal_muscle 111 .74 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000000994 ortholog_one2many 5 retrogenes
retro_cfam_1613, retro_cfam_779, retro_cfam_813, retro_cfam_889, retro_cfam_965,
Callithrix jacchus ENSCJAG00000013613 ortholog_one2one 1 retrogene
retro_cjac_112,
Dipodomys ordii ENSDORG00000002912 ortholog_one2one 3 retrogenes
retro_dord_338, retro_dord_512, retro_dord_720,
Equus caballus ENSECAG00000003931 ortholog_one2one 2 retrogenes
retro_ecab_466, retro_ecab_789,
Echinops telfairi ENSETEG00000007560 ortholog_one2one 5 retrogenes
retro_etel_1730, retro_etel_515, retro_etel_758, retro_etel_762, retro_etel_811,
Gorilla gorilla ENSGGOG00000022930 possible_ortholog 7 retrogenes
retro_ggor_1288, retro_ggor_1300, retro_ggor_2601, retro_ggor_2602, retro_ggor_2796, retro_ggor_2797, retro_ggor_778,
Latimeria chalumnae ENSLACG00000016599 possible_ortholog 1 retrogene
retro_lcha_103,
Microcebus murinus ENSMICG00000017588 possible_ortholog 3 retrogenes
retro_mmur_270, retro_mmur_803, retro_mmur_997,
Myotis lucifugus ENSMLUG00000022919 possible_ortholog 13 retrogenes
retro_mluc_1455, retro_mluc_1738, retro_mluc_1895, retro_mluc_2009, retro_mluc_2260, retro_mluc_2261, retro_mluc_2520, retro_mluc_2527, retro_mluc_2557, retro_mluc_267, retro_mluc_383, retro_mluc_841, retro_mluc_944,
Macaca mulatta ENSMMUG00000013046 ortholog_one2one 7 retrogenes
retro_mmul_1171, retro_mmul_2082, retro_mmul_2091, retro_mmul_2508, retro_mmul_654, retro_mmul_795, retro_mmul_919,
Monodelphis domestica ENSMODG00000014168 ortholog_one2one 4 retrogenes
retro_mdom_1173, retro_mdom_155, retro_mdom_1648, retro_mdom_929,
Mus musculus ENSMUSG00000036309 ortholog_one2one 1 retrogene
retro_mmus_2518,
Nomascus leucogenys ENSNLEG00000008051 ortholog_one2one 7 retrogenes
retro_nleu_1171, retro_nleu_1615, retro_nleu_1667, retro_nleu_2290, retro_nleu_323, retro_nleu_472, retro_nleu_827,
Ochotona princeps ENSOPRG00000006637 ortholog_one2one 7 retrogenes
retro_opri_1199, retro_opri_188, retro_opri_23, retro_opri_513, retro_opri_547, retro_opri_902, retro_opri_955,
Pongo abelii ENSPPYG00000015783 ortholog_one2one 7 retrogenes
retro_pabe_1915, retro_pabe_199, retro_pabe_2072, retro_pabe_2736, retro_pabe_2756, retro_pabe_626, retro_pabe_824,
Pteropus vampyrus ENSPVAG00000012427 ortholog_one2one 4 retrogenes
retro_pvam_1040, retro_pvam_1137, retro_pvam_1269, retro_pvam_503,
Sorex araneus ENSSARG00000008307 ortholog_one2one 4 retrogenes
retro_sara_241, retro_sara_446, retro_sara_492, retro_sara_609,
Tupaia belangeri ENSTBEG00000015544 ortholog_one2one 15 retrogenes
retro_tbel_1227, retro_tbel_1279, retro_tbel_1327, retro_tbel_1758, retro_tbel_1787, retro_tbel_1903, retro_tbel_1905, retro_tbel_240, retro_tbel_3024, retro_tbel_3267, retro_tbel_3848, retro_tbel_405, retro_tbel_4095, retro_tbel_528, retro_tbel_711,
Tarsius syrichta ENSTSYG00000010696 ortholog_one2one 11 retrogenes
retro_tsyr_1037, retro_tsyr_1370, retro_tsyr_1400, retro_tsyr_1896, retro_tsyr_1924, retro_tsyr_2058, retro_tsyr_210, retro_tsyr_336, retro_tsyr_396, retro_tsyr_464, retro_tsyr_762,
Tursiops truncatus ENSTTRG00000016858 ortholog_one2one 6 retrogenes
retro_ttru_1344, retro_ttru_1764, retro_ttru_1801, retro_ttru_656, retro_ttru_657, retro_ttru_961,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_223 67.02 58.02
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2. retro_cpor_243 50.48 62.96
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3. retro_cpor_830 72.52 77.78
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4. retro_cpor_832 94.51 100.00
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5. retro_cpor_1038 58.33 65.43
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6. retro_cpor_1133 69.15 56.17
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7. retro_cpor_1345 73.12 57.41
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8. retro_cpor_1446 75.76 100.00
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Download FASTA sequences of all ENSCPOG00000005164 retrocopies