Parental gene:

SUMO2, ENSCPOG00000004581

Aliases:None
Description:small ubiquitin-like modifier 2 [Source:HGNC Symbol;Acc:11125]
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_76:19299..36110(+)


>ENSCPOG00000004581
ATGGCCGATGAAAAGCCTAAGGAAGGAGTCAAGACTGAGAACAACGACCATATTAATTTGAAGGTGGCGGGGCAGGATGG
TTCTGTGGTGCAGTTTAAAATTAAGAGGCATACACCACTTAGTAAACTAATGAAAGCCTATTGTGAACGACAGGGTTTGT
CAATGAGGCAGATCAGATTCCGATTTGATGGACAGCCAATCAATGAAACAGACACACCTGCACAGTTGGAAATGGAGGAT
GAAGATACAATTGATGTGTTCCAGCAGCAGACAGGAGGTGTCTACTAA

Library Parental gene expression (RPM)
SRP017611_liver 19 .76 RPM
SRP017611_kidney 34 .76 RPM
SRP017611_brain 36 .58 RPM
SRP040447_lung 36 .67 RPM
SRP040447_skeletal_muscle 17 .50 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009189 ortholog_one2one 13 retrogenes
retro_amel_1097, retro_amel_1125, retro_amel_1199, retro_amel_1263, retro_amel_1434, retro_amel_152, retro_amel_1665, retro_amel_276, retro_amel_35, retro_amel_616, retro_amel_653, retro_amel_662, retro_amel_722,
Cavia porcellus ENSCPOG00000012143 within_species_paralog 1 retrogene
retro_cpor_1279,
Cavia porcellus ENSCPOG00000025203 within_species_paralog 3 retrogenes
retro_cpor_328, retro_cpor_645, retro_cpor_963,
Homo sapiens ENSG00000188612 ortholog_one2one 2 retrogenes
retro_hsap_4036, retro_hsap_4095,
Loxodonta africana ENSLAFG00000025811 possible_ortholog 10 retrogenes
retro_lafr_104, retro_lafr_1222, retro_lafr_1240, retro_lafr_200, retro_lafr_254, retro_lafr_324, retro_lafr_36, retro_lafr_488, retro_lafr_858, retro_lafr_888,
Monodelphis domestica ENSMODG00000007222 possible_ortholog 11 retrogenes
retro_mdom_1263, retro_mdom_1472, retro_mdom_1474, retro_mdom_1560, retro_mdom_1598, retro_mdom_1755, retro_mdom_237, retro_mdom_378, retro_mdom_517, retro_mdom_788, retro_mdom_986,
Oryctolagus cuniculus ENSOCUG00000028195 ortholog_one2many 5 retrogenes
retro_ocun_110, retro_ocun_136, retro_ocun_175, retro_ocun_22, retro_ocun_46,
Pongo abelii ENSPPYG00000029777 ortholog_one2one 2 retrogenes
retro_pabe_164, retro_pabe_84,
Pan troglodytes ENSPTRG00000042199 ortholog_one2one 19 retrogenes
retro_ptro_1004, retro_ptro_1183, retro_ptro_1263, retro_ptro_135, retro_ptro_143, retro_ptro_1775, retro_ptro_2051, retro_ptro_2147, retro_ptro_2212, retro_ptro_2247, retro_ptro_2252, retro_ptro_2400, retro_ptro_2463, retro_ptro_2528, retro_ptro_2605, retro_ptro_2666, retro_ptro_2759, retro_ptro_3260, retro_ptro_65,
Sus scrofa ENSSSCG00000017212 ortholog_one2one 15 retrogenes
retro_sscr_1112, retro_sscr_1132, retro_sscr_1147, retro_sscr_1148, retro_sscr_123, retro_sscr_249, retro_sscr_277, retro_sscr_409, retro_sscr_591, retro_sscr_684, retro_sscr_754, retro_sscr_765, retro_sscr_814, retro_sscr_847, retro_sscr_969,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_202 57.81 66.32
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2. retro_cpor_357 71.28 96.84
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3. retro_cpor_823 79.17 100.00
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4. retro_cpor_838 69.07 100.00
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5. retro_cpor_869 68.42 96.84
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6. retro_cpor_894 61.86 100.00
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7. retro_cpor_1029 64.13 96.84
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8. retro_cpor_1297 89.47 100.00
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9. retro_cpor_1496 66.67 100.00
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Download FASTA sequences of all ENSCPOG00000004581 retrocopies