Parental gene: | PAIP1, ENSCPOG00000002525 |
| Aliases: | None |
| Description: | None |
| Organism: | Guinea Pig (Cavia porcellus) |
| Coordinates: | scaffold_29:13555185..13588581(+) |
>ENSCPOG00000002525
CCTCCCCCGCGTGCTGTCCGGACGAACACAGCGGCGGGGGCCCAGAGCGAGGTCCCCGCCGGCTCCCAGCGGCCTCCCCG
GTCCGGGGCGCTCCCAGAACAAACGAGGCCCCTGAGAGCTCCACCTAGCTCACAGGATAAAACCCCACAGCAGAACTCAG
AGTCAGCAATGGCTAAGCCCCAGGTGGTTGTGGCTCCTGTGTTAATGTCTAAGCTGTCTGCCAACGCCCCCGAATTTTAC
CCATCAGGTTATTCTGCTTATACAGAATCCTATGAAGATGGTTGTGAGGATTATCCCACTCTATCAGACTATGTTCAAGA
GTTTTTGAATCATCTTACAGAGCAACCTGGCAGTTTTGAAACTGAAATTGAACAATTTGCAGAGACCCTGAATGGCTGGG
TTACAACTGATGATGCTTTGCAAGAACTTGTGGAGCTCATCTACCAACAGGCCACATCTATCCCAAATTTCTCTTACATG
GGAGCTCGCCTGTGTAATTACCTGTCCCATCATCTGACAATTAGTCCACAGAGTGGCAACTTCCGCCAATTGCTACTTCA
AAGATGTCGAATCCACCACAAAGTTAAAGATCAAGCTGCGAAAGGAGATGAAGTGACTCGAAAGCGATTTCATGCATTTG
TACTCTTTCTGGGAGAACTTTATCTTAACCTGGAGATCAAGGGAACAAATGGGCAGGTTACGAGAGCAGATATTCTTCAA
GTTGGTCTGCGTGAATTGCTGAATGCCCTCTTCTCTAATCCAATGGATGACAACTTAATTTGTGCAGTAAAATTATTAAA
GTTGACAGGATCAGTTTTGGAAGATGCTTGGAAAGAAAAATTAAAGACTGATATGGAAGAAATTATTCAGAGAATTGAAA
ATGTTGTCCTAGATGCAAACTGCAGCAGAGATGTAAAACAGATGCTCTTGAAGCTTGTAGAACTTCGGTCAAGTAACTGG
GGCAGAGTACATGCAACTTCAACGTACAGAGAAGCAACACCTGAAAATGATCCTAACTACTTTATGAATGAACCAACATT
TTATACATCTGATGGGGTTCCTTTCACTGCAGCAGATCCAGATTACCAAGAGAAGTATCAAGAGTTACTTGAAAGAGAGG
ACTTTTTTCCAGATTATGAAGAAAATGGAACAGATTTATCAGGGGCTGGTGATCCATACTTGGATGATATTGATGATGAG
ATGGACCCAGAAATTGAAGAAGCTTATGAAAAGTTTTGTTTGGAATCAGAGCATAAGCGAAAACAGTAA
CCTCCCCCGCGTGCTGTCCGGACGAACACAGCGGCGGGGGCCCAGAGCGAGGTCCCCGCCGGCTCCCAGCGGCCTCCCCG
GTCCGGGGCGCTCCCAGAACAAACGAGGCCCCTGAGAGCTCCACCTAGCTCACAGGATAAAACCCCACAGCAGAACTCAG
AGTCAGCAATGGCTAAGCCCCAGGTGGTTGTGGCTCCTGTGTTAATGTCTAAGCTGTCTGCCAACGCCCCCGAATTTTAC
CCATCAGGTTATTCTGCTTATACAGAATCCTATGAAGATGGTTGTGAGGATTATCCCACTCTATCAGACTATGTTCAAGA
GTTTTTGAATCATCTTACAGAGCAACCTGGCAGTTTTGAAACTGAAATTGAACAATTTGCAGAGACCCTGAATGGCTGGG
TTACAACTGATGATGCTTTGCAAGAACTTGTGGAGCTCATCTACCAACAGGCCACATCTATCCCAAATTTCTCTTACATG
GGAGCTCGCCTGTGTAATTACCTGTCCCATCATCTGACAATTAGTCCACAGAGTGGCAACTTCCGCCAATTGCTACTTCA
AAGATGTCGAATCCACCACAAAGTTAAAGATCAAGCTGCGAAAGGAGATGAAGTGACTCGAAAGCGATTTCATGCATTTG
TACTCTTTCTGGGAGAACTTTATCTTAACCTGGAGATCAAGGGAACAAATGGGCAGGTTACGAGAGCAGATATTCTTCAA
GTTGGTCTGCGTGAATTGCTGAATGCCCTCTTCTCTAATCCAATGGATGACAACTTAATTTGTGCAGTAAAATTATTAAA
GTTGACAGGATCAGTTTTGGAAGATGCTTGGAAAGAAAAATTAAAGACTGATATGGAAGAAATTATTCAGAGAATTGAAA
ATGTTGTCCTAGATGCAAACTGCAGCAGAGATGTAAAACAGATGCTCTTGAAGCTTGTAGAACTTCGGTCAAGTAACTGG
GGCAGAGTACATGCAACTTCAACGTACAGAGAAGCAACACCTGAAAATGATCCTAACTACTTTATGAATGAACCAACATT
TTATACATCTGATGGGGTTCCTTTCACTGCAGCAGATCCAGATTACCAAGAGAAGTATCAAGAGTTACTTGAAAGAGAGG
ACTTTTTTCCAGATTATGAAGAAAATGGAACAGATTTATCAGGGGCTGGTGATCCATACTTGGATGATATTGATGATGAG
ATGGACCCAGAAATTGAAGAAGCTTATGAAAAGTTTTGTTTGGAATCAGAGCATAAGCGAAAACAGTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 39 .22 RPM |
| SRP017611_kidney | 42 .71 RPM |
| SRP017611_brain | 24 .50 RPM |
| SRP040447_lung | 37 .88 RPM |
| SRP040447_skeletal_muscle | 36 .38 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000020376 | possible_ortholog | 1 retrogene | |
| Erinaceus europaeus | ENSEEUG00000009651 | possible_ortholog | 1 retrogene | |
| Ochotona princeps | ENSOPRG00000000386 | ortholog_one2one | 2 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000011203 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cpor_133 | 95.14 | 92.42 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cpor_197 | 93.86 | 92.42 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCPOG00000002525 retrocopies