Parental gene: | THOC5, ENSCJAG00000019894 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 1:192375468..192418222(-) |
>ENSCJAG00000019894
ATGTCATCAGAATCAAGCAAAAAACGGAAGCCCAAAGTGATCCGAAGCGATGGAGCCCCACCTGAAGGAAAGCGGAATCG
ATCTGATACCGAGCAGGAAGGTAAATACTACAGTGAGGAGGCTGAGATGGATCTGCGGGACCCTGGCAGAGACTATGAGT
TATACAAGTACACCTGCCAGGAGCTACAGAGGCTGATGGCTGAGATCCAAGACCTGAAGAGCAGGGGTGGCAAGGATGTG
GCAATTGAAATAGAAGAACGGAGGATCCAGAGCTGTGTGCATTTCATGACTTTGAAAAAGCTTAACCGATTAGCCCACAT
CAGGTTGAAGAAAGGAAGAGATCAGACCCATGAGGCTAAGCAGAAAGTAGATGCCTATCACCTGCAGCTCCAGAACCTGT
TGTATGAGGTGATGCACCTACAAAAGGAGATCACCAAATGTTTGGAGTTTAAGTCAAAGCATGAAGAAATTGATCTGGTC
AGTTTAGAGGAGTTTTATGAGGAGGCTCCACCAGATATCAGCAAGGCTGAAGTCACCATGGGAGACCCTCACCAGCAAAC
ACTGGCACGCCTGGACTGGGAGCTGGAGCAGCGTAAAAGGCTGGCAGAGAAGTACTGTGAATGCCTATCCAACAAGGAGA
AGATCCTCAAGGAAATTGAGGTGAAGAAGGAATACCTGAGCAGCCTCCAGCCTCGCCTCAACAGCATCATGCAGGCTTCC
CTTCCGGTGCAGGAGTACCTATTTATGCCATTTGACCAGGCTCACAAGCAGTATGAGACTGCCAGGCACCTGCCACCTCC
CCTATATGTCCTCTTTGTTCAGGCCACTGCATATGGGCAGGCCTGTGATAAGACGTTATCTGTGGCAATTGAAGGCAGTG
TGGATGAAGCCAAGGCTCTGTTCAAGCCTCCAGAGGACTCCCAAGATGACGAGAGTGACTCAGATGCTGAGGAGGAGCAG
ACCACGAAACGTCGGAGACCCACGCTGGGGGTTCAGTTGGATGACAAACGCAAGGAGATGCTGAAGAGGCACCCACTGTC
CGTCATGCTTGACCTAAAGTGCAAAGATGACAGTGTGCTTCACCTGACTTTCTTCTACCTCATGAACCTCAACATCATGA
CAGTAAAAGCCAAAGTGACAACTGCCACGGAGCTGATCACCCCCATCAGTGCAGGTGACTTGCTGTCTCCTGACTCAGTC
CTGAGTTGCTTGTATCCTGGGGATCATGGAAAGAAAACTCCGAATCCAGCCAATCAGTATCAGTTTGATAAAGTTGGCAT
CCTGACTTTGAGCGACTATGTACTCGAGTTAGGTCACCCCTATTTGTGGGTACAGAAGCTAGGTGGTCTCCACTTCCCCA
AAGAGCAGCCCCAGCAAACAGTAATTGCTGATCACTCGCTGAGCGCCAGCCACATGGAGACCACCATGAAACTTCTGAAG
ACCAGGGTGCAGTCCCGCCTGGCCCTCCACAAACAGTTTGCCTCCCTAGAACATGGCATTGTGCCAGTTACCAGTGATTG
CCAGTACCTCTTCCCTGCCAAGGTTGTCTCTCGCCTGGTAAAGTGGGTGACAGTTGCCCATGAGGATTACATGGAGCTGC
ATTTCACCAAAGACATTGTGGATGCGGGGCTGGCTGGGGACACCAATCTCTACTACATGGCACTCGTCGAAAGGGGCACA
GCCAAACTGCAGGCTGCTGTGGTATTGAACCCTGGTTACTCCTCCATCCCACCTATTTTTCAGCTCTGTTTGAACTGGAA
AGGGGAGAAAACCAACAGCAACGATGACAACATTCGGGCCATGGAGAGTGAAGTCAATGTGTGCTACAAGGAGCTGTGTG
GCCCTTGGCCCAGCCACCAGCTGTTGACCAACCAGCTGCAGCGGCTGTGTGTGCTGCTGGATGTTTACCTGGAGACCGAG
AGCCATGACGACAGTGTGGAGGGGCCCAAGGAATTTCCTCAGGAGAAGATGTGTCTGCGGCTCTTCAGGGGTCCTAGCAG
GATGAAGCCATTTAAATACAACCATCCTCAGGGATTCTTCAGCCATCGCTGA
ATGTCATCAGAATCAAGCAAAAAACGGAAGCCCAAAGTGATCCGAAGCGATGGAGCCCCACCTGAAGGAAAGCGGAATCG
ATCTGATACCGAGCAGGAAGGTAAATACTACAGTGAGGAGGCTGAGATGGATCTGCGGGACCCTGGCAGAGACTATGAGT
TATACAAGTACACCTGCCAGGAGCTACAGAGGCTGATGGCTGAGATCCAAGACCTGAAGAGCAGGGGTGGCAAGGATGTG
GCAATTGAAATAGAAGAACGGAGGATCCAGAGCTGTGTGCATTTCATGACTTTGAAAAAGCTTAACCGATTAGCCCACAT
CAGGTTGAAGAAAGGAAGAGATCAGACCCATGAGGCTAAGCAGAAAGTAGATGCCTATCACCTGCAGCTCCAGAACCTGT
TGTATGAGGTGATGCACCTACAAAAGGAGATCACCAAATGTTTGGAGTTTAAGTCAAAGCATGAAGAAATTGATCTGGTC
AGTTTAGAGGAGTTTTATGAGGAGGCTCCACCAGATATCAGCAAGGCTGAAGTCACCATGGGAGACCCTCACCAGCAAAC
ACTGGCACGCCTGGACTGGGAGCTGGAGCAGCGTAAAAGGCTGGCAGAGAAGTACTGTGAATGCCTATCCAACAAGGAGA
AGATCCTCAAGGAAATTGAGGTGAAGAAGGAATACCTGAGCAGCCTCCAGCCTCGCCTCAACAGCATCATGCAGGCTTCC
CTTCCGGTGCAGGAGTACCTATTTATGCCATTTGACCAGGCTCACAAGCAGTATGAGACTGCCAGGCACCTGCCACCTCC
CCTATATGTCCTCTTTGTTCAGGCCACTGCATATGGGCAGGCCTGTGATAAGACGTTATCTGTGGCAATTGAAGGCAGTG
TGGATGAAGCCAAGGCTCTGTTCAAGCCTCCAGAGGACTCCCAAGATGACGAGAGTGACTCAGATGCTGAGGAGGAGCAG
ACCACGAAACGTCGGAGACCCACGCTGGGGGTTCAGTTGGATGACAAACGCAAGGAGATGCTGAAGAGGCACCCACTGTC
CGTCATGCTTGACCTAAAGTGCAAAGATGACAGTGTGCTTCACCTGACTTTCTTCTACCTCATGAACCTCAACATCATGA
CAGTAAAAGCCAAAGTGACAACTGCCACGGAGCTGATCACCCCCATCAGTGCAGGTGACTTGCTGTCTCCTGACTCAGTC
CTGAGTTGCTTGTATCCTGGGGATCATGGAAAGAAAACTCCGAATCCAGCCAATCAGTATCAGTTTGATAAAGTTGGCAT
CCTGACTTTGAGCGACTATGTACTCGAGTTAGGTCACCCCTATTTGTGGGTACAGAAGCTAGGTGGTCTCCACTTCCCCA
AAGAGCAGCCCCAGCAAACAGTAATTGCTGATCACTCGCTGAGCGCCAGCCACATGGAGACCACCATGAAACTTCTGAAG
ACCAGGGTGCAGTCCCGCCTGGCCCTCCACAAACAGTTTGCCTCCCTAGAACATGGCATTGTGCCAGTTACCAGTGATTG
CCAGTACCTCTTCCCTGCCAAGGTTGTCTCTCGCCTGGTAAAGTGGGTGACAGTTGCCCATGAGGATTACATGGAGCTGC
ATTTCACCAAAGACATTGTGGATGCGGGGCTGGCTGGGGACACCAATCTCTACTACATGGCACTCGTCGAAAGGGGCACA
GCCAAACTGCAGGCTGCTGTGGTATTGAACCCTGGTTACTCCTCCATCCCACCTATTTTTCAGCTCTGTTTGAACTGGAA
AGGGGAGAAAACCAACAGCAACGATGACAACATTCGGGCCATGGAGAGTGAAGTCAATGTGTGCTACAAGGAGCTGTGTG
GCCCTTGGCCCAGCCACCAGCTGTTGACCAACCAGCTGCAGCGGCTGTGTGTGCTGCTGGATGTTTACCTGGAGACCGAG
AGCCATGACGACAGTGTGGAGGGGCCCAAGGAATTTCCTCAGGAGAAGATGTGTCTGCGGCTCTTCAGGGGTCCTAGCAG
GATGAAGCCATTTAAATACAACCATCCTCAGGGATTCTTCAGCCATCGCTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 34 .98 RPM |
| SRP051959_skeletal_muscle | 44 .86 RPM |
| SRP051959_lymph_node | 38 .70 RPM |
| SRP051959_lung | 31 .88 RPM |
| SRP051959_liver | 30 .95 RPM |
| SRP051959_kidney | 31 .73 RPM |
| SRP051959_heart | 26 .61 RPM |
| SRP051959_colon | 23 .72 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Cavia porcellus | ENSCPOG00000010974 | ortholog_one2one | 1 retrogene | |
| Felis catus | ENSFCAG00000004247 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000012135 | ortholog_one2one | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000000542 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_1965 | 87.84 | 91.36 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_2647 | 90.43 | 84.19 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000019894 retrocopies