Parental gene:

CBX5, ENSCJAG00000018847

Aliases:None
Description:chromobox homolog 5 [Source:HGNC Symbol;Acc:1555]
Organism:Marmoset (Callithrix jacchus)
Coordinates:9:43176808..43218435(-)


>ENSCJAG00000018847
ATGGGAAAGAAAACCAAGCGGACAGCTGACAGTTCTTCTTCAGAGGATGAGGAGGAGTATGTTGTGGAGAAGGTGCTAGA
CAGACGCGTGGTTAAGGGACAAGTGGAATATCTACTGAAGTGGAAAGGCTTTTCTGAAGAGCACAATACCTGGGAACCTG
AGAAAAACTTGGATTGCCCTGAGCTAATTTCTGAGTTTATGAAAAAGTATAAGAAGATGAAGGAGGGTGAAAATAACAAA
CCCAGGGAAAAGTCAGAAAGTAATAAAAGGAAATCCAATTTCTCTAACAGTGCTGATGATATCAAATCTAAAAAAAAGAG
AGAGCAGAGCAATGATATAGCTCGGGGCTTTGAGAGAGGACTGGAACCAGAAAAGATCATTGGGGCGACAGATTCCTGTG
GTGATTTAATGTTCCTAATGAAATGGAAAGACACAGATGAAGCTGACCTGGTTCTTGCAAAAGAAGCTAATGTGAAATGT
CCACAAATTGTGATAGCATTTTATGAAGAGAGACTGACATGGCATGCATATCCTGAGGACGCGGAAAACAAAGAGAAAGA
AACGGCAAAGAGCTAA

Library Parental gene expression (RPM)
SRP051959_spleen 24 .77 RPM
SRP051959_skeletal_muscle 9 .13 RPM
SRP051959_lymph_node 21 .87 RPM
SRP051959_lung 22 .95 RPM
SRP051959_liver 7 .43 RPM
SRP051959_kidney 27 .56 RPM
SRP051959_heart 21 .29 RPM
SRP051959_colon 15 .42 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000007532 within_species_paralog 2 retrogenes
retro_cjac_191, retro_cjac_51,
Callithrix jacchus ENSCJAG00000007952 within_species_paralog 8 retrogenes
retro_cjac_1100, retro_cjac_1414, retro_cjac_1612, retro_cjac_2405, retro_cjac_2623, retro_cjac_2728, retro_cjac_3322, retro_cjac_869,
Echinops telfairi ENSETEG00000001220 ortholog_one2one 1 retrogene
retro_etel_678,
Homo sapiens ENSG00000094916 ortholog_one2one 1 retrogene
retro_hsap_2811,
Gorilla gorilla ENSGGOG00000000041 ortholog_one2one 1 retrogene
retro_ggor_1955,
Nomascus leucogenys ENSNLEG00000017671 ortholog_one2one 1 retrogene
retro_nleu_428,
Pongo abelii ENSPPYG00000004599 ortholog_one2one 1 retrogene
retro_pabe_2307,
Pan troglodytes ENSPTRG00000005034 ortholog_one2one 1 retrogene
retro_ptro_1905,
Tursiops truncatus ENSTTRG00000004524 ortholog_one2one 1 retrogene
retro_ttru_1859,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2020 68.93 52.88
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Download FASTA sequences of all ENSCJAG00000018847 retrocopies