Parental gene: | ENSCJAG00000018477 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 9:42167053..42170985(+) |
>ENSCJAG00000018477
ATGGCGCAGTCGATTAACATCACGGAGCTGAATCTGCCGCAGCTAGAAATGCTCAAAAACCAGCTGGACCAGGAAGTGGA
GTTCTTGTCCACGTCCATTGCCCAGCTCAAAGTGGTACAGACCAAGTATGTGGAAGCCAAGGACTGTCTGAACGTGCTGA
ACAAGAGCAACGAGGGGAAAGAATTACTCGTCCCACTGACGAGTTCTATGTATGTCCCTGGGAAGCTGCATGATGTGGAG
CACGTGCTCATCGATGTGGGAACTGGGTACTATGTAGAGAAGACAGCTGAGGATGCCAAGGACTTTTTCAAGAGGAAGAT
AGATTTTCTAACCAAGCAGATGGAGAAAATCCAACCAGCTCTCCAGGAGAAGCACGCCATGAAACAGGCTGTCATGGAAA
TGATGAGCCAGAAGATTCAGCAGCTCACAGCCCTGGGGGCAGCTCAGGCTACTGCTAAGGCCTGA
ATGGCGCAGTCGATTAACATCACGGAGCTGAATCTGCCGCAGCTAGAAATGCTCAAAAACCAGCTGGACCAGGAAGTGGA
GTTCTTGTCCACGTCCATTGCCCAGCTCAAAGTGGTACAGACCAAGTATGTGGAAGCCAAGGACTGTCTGAACGTGCTGA
ACAAGAGCAACGAGGGGAAAGAATTACTCGTCCCACTGACGAGTTCTATGTATGTCCCTGGGAAGCTGCATGATGTGGAG
CACGTGCTCATCGATGTGGGAACTGGGTACTATGTAGAGAAGACAGCTGAGGATGCCAAGGACTTTTTCAAGAGGAAGAT
AGATTTTCTAACCAAGCAGATGGAGAAAATCCAACCAGCTCTCCAGGAGAAGCACGCCATGAAACAGGCTGTCATGGAAA
TGATGAGCCAGAAGATTCAGCAGCTCACAGCCCTGGGGGCAGCTCAGGCTACTGCTAAGGCCTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 53 .28 RPM |
| SRP051959_skeletal_muscle | 27 .01 RPM |
| SRP051959_lymph_node | 64 .95 RPM |
| SRP051959_lung | 45 .04 RPM |
| SRP051959_liver | 31 .43 RPM |
| SRP051959_kidney | 47 .57 RPM |
| SRP051959_heart | 31 .05 RPM |
| SRP051959_colon | 22 .54 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000012402 | ortholog_one2many | 2 retrogenes | |
| Canis familiaris | ENSCAFG00000007016 | ortholog_many2many | 4 retrogenes | |
| Dasypus novemcinctus | ENSDNOG00000013002 | ortholog_one2many | 1 retrogene | |
| Echinops telfairi | ENSETEG00000002111 | ortholog_one2many | 3 retrogenes | |
| Felis catus | ENSFCAG00000005871 | ortholog_one2many | 4 retrogenes | |
| Homo sapiens | ENSG00000123349 | ortholog_one2many | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000026308 | ortholog_one2many | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000012110 | ortholog_one2many | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000022030 | ortholog_one2many | 2 retrogenes | |
| Mustela putorius furo | ENSMPUG00000006059 | ortholog_many2many | 1 retrogene | |
| Mus musculus | ENSMUSG00000001289 | ortholog_one2many | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000017706 | ortholog_one2many | 3 retrogenes | |
| Otolemur garnettii | ENSOGAG00000009463 | ortholog_many2many | 2 retrogenes | |
| Ochotona princeps | ENSOPRG00000015638 | ortholog_one2many | 1 retrogene | |
| Procavia capensis | ENSPCAG00000012413 | ortholog_one2many | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000004575 | ortholog_one2many | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000005010 | ortholog_one2many | 1 retrogene | |
| Sorex araneus | ENSSARG00000006221 | ortholog_one2many | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000016436 | ortholog_one2many | 4 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_42 | 100.00 | 55.84 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_993 | 96.73 | 99.35 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_1590 | 92.90 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cjac_1614 | 98.70 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_cjac_1707 | 86.67 | 68.18 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_cjac_2274 | 96.10 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000018477 retrocopies