Parental gene:

RFC3, ENSCJAG00000018380

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:5:147030171..147172361(+)


>ENSCJAG00000018380
ATGAGTCTCTGGGTGGATAAGTATCGGCCCTGCTCTTTGGGACGGCTGGACTATCACAAGGAGCAGGCGGCCCAGCTGCG
CAACCTGGTGCAGTGTGGTGACTTTCCTCATCTCTTAGTGTATGGACCATCAGGTGCTGGAAAAAAGACAAGAATTATGT
GTATTCTACGTGAACTTTATGGTGTTGGAGTGGAAAAATTGAGAATTGAACATCAGACCATCACAACTCCATCTAAAAAG
AAAATCGAAATCAGCACCATTGCAAGTAACTACCACCTTGAAGTTAATCCTAGTGATGCTGGAAATAGTGACCGAGTAGT
AATTCAGGAGATGTTGAAAACAGTGGCACAATCACAGCAACTTGAAACAAACTCTCAAAGGGATTTTAAAGTGGTATTAT
TGACAGAAGTTGACAAACTCACCAAAGATGCTCAGCATGCCTTGCGAAGAACCATGGAAAAATATATGTCTACCTGCAGA
TTGATCTTGTGCTGCAATTCTACATCTAAAGTGATACCACCTATTCGAAGTAGGTGCTTGGCAGTTCGTGTGCCTGCTCC
CAGCATTGAAGATATTTGTCATGTGTTATCTACTGTGTGCAAGAAGGAAGGTCTGAATCTTCCTCCACAACTGGCTCATA
GACTTGCAGAGAAGTCCTGCAGAAATCTCAGAAAAGCCCTACTTATGTGTGAAGCCTGCAGAGTGCAACAATATCCTTTT
ACTGTAGATCAAGAAATCCCTGAGACAGATTGGGAGGTGTATCTGAGGGAGACTGCAAATGCCATTGTCAGTCAGCAAAC
TCCACAAAGGCTCCTTGAAGTTCGTGGAAGGCTGTATGAGCTTCTAACTCATTGTATTCCTCCTGAGATAATAATGAAGG
GCCTTCTCTTAGAACTGTTACATAATTGTGATGGACAACTGAAAGGGGAAGTGGCCCAAATGGCAGCTTATTATGAACAT
CGTCTGCAGCTGGGTAGCAAGGCCATTTATCACTTGGAAGCGTTTGTGGCCAAATTCATGGCACTTTATAAGAAGTTCAT
GGAGGATGGATTGGAAGGCATGATGTTCTGA

Library Parental gene expression (RPM)
SRP051959_spleen 6 .26 RPM
SRP051959_skeletal_muscle 3 .91 RPM
SRP051959_lymph_node 6 .60 RPM
SRP051959_lung 5 .84 RPM
SRP051959_liver 1 .52 RPM
SRP051959_kidney 3 .64 RPM
SRP051959_heart 5 .54 RPM
SRP051959_colon 6 .39 RPM



Species Parental gene accession Homology type Retrogenes number
Cavia porcellus ENSCPOG00000008739 ortholog_one2one 1 retrogene
retro_cpor_405,
Myotis lucifugus ENSMLUG00000014088 ortholog_one2one 1 retrogene
retro_mluc_1754,
Mustela putorius furo ENSMPUG00000001885 ortholog_one2one 1 retrogene
retro_mputfur_1073,
Nomascus leucogenys ENSNLEG00000001169 ortholog_one2one 1 retrogene
retro_nleu_674,
Pongo abelii ENSPPYG00000005272 ortholog_one2one 1 retrogene
retro_pabe_2420,
Tupaia belangeri ENSTBEG00000004725 ortholog_one2one 1 retrogene
retro_tbel_4191,
Tarsius syrichta ENSTSYG00000009501 ortholog_one2one 2 retrogenes
retro_tsyr_1772, retro_tsyr_331,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1611 75.64 65.17
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Download FASTA sequences of all ENSCJAG00000018380 retrocopies