Parental gene: | ESRRA, ENSCJAG00000018030 |
| Aliases: | None |
| Description: | estrogen-related receptor alpha [Source:HGNC Symbol;Acc:3471] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 11:119862964..119873489(+) |
>ENSCJAG00000018030
TTGTGTCCTACAAGCAGCCGGGCGCCGCCAAGTGAGGGGACGCGGCGCGGTGGGGCGGCGCGGCCCGAGGAGGCGGCGGA
GGAGGGGCCGCCCGCGGCCCCCGGCTCACCCCGGCATTCCGGGCCGCTCGGCCCCCATGCCTGCCCGCCAGCCCTGCCGG
AGCCCCAGGTGACCAGCGCCATGTCCAGCCAGGTGGTGGGCATTGAGCCTCTATACATCAAGGCAGAGCCAGCCAGCCCC
GACAGTCCAAAGGGTTCCTCAGAGACGGAGACCGAGCCTCCTGTGACCCTTGCCCCTGGTCCAGCTCCCACCCGCTGCCT
CCCAGGCCATAAGGAAGAGGAGGATGGGGAGGGGGCTGGGCCTGGCGAGCAGGGTGGTGGGAAGCTGGTGCTCAGCTCCC
TGCCCAAGCGCCTCTGCCTGGTCTGTGGGGATGTGGCCTCCGGCTACCACTACGGTGTGGCATCCTGTGAGGCCTGCAAA
GCCTTCTTCAAGAGGACCATCCAGGGGAGCATCGAGTACAGCTGTCCAGCTTCCAATGAGTGTGAGATCACCAAGCGGAG
ACGCAAGGCCTGCCAGGCCTGCCGCTTCACCAAGTGCCTGCGGGTGGGCATGCTCAAGGAGGGAGTACGCCTGGACCGCG
TCCGGGGTGGGCGGCAGAAGTACAAGCGGCGGCCAGAGGTGGACCCGCTGCCCTTCCCAGGCCCCTTCCCTGCTGGGCCC
CTGGCAGTAGCTGGAGGCCCCCGGAAGACAGCAGCCCCAGTGAATGCACTGGTGTCTCATCTGCTGGTCGTGGAGCCTGA
GAAACTCTATGCCATGCCTGACCCTGCGGGCCCTGATGGGCACCTCCCAGCCGTGGCTACCCTCTGTGACCTCTTTGACC
GAGAGATTGTGGTCACCATCAGCTGGGCCAAGAGCATCCCAGGCTTCTCATCGCTGTCGCTGTCTGACCAGATGTCAGTA
CTGCAGAGCGTGTGGATGGAGGTGCTGGTGCTGGGTGTGGCCCAGCGCTCACTGCCACTGCAGGATGAGCTGGCCTTCGC
TGAGGACTTAGTCCTGGATGAAGAGGGGGCTCGGGCAGCTGGCCTAGGGGAACTAGGGGCTGCGCTGCTGCAGCTGGTGC
GGCGACTGCAGGCCCTCCGATTGGAGCGAGAGGAGTATGTCCTCCTGAAGGCCCTGGCCCTTGCCAATTCAGACTCTGTG
CACATTGAAGATGCCGAGCTGTGGAGCAGCTGCGAGAAGCTGCACGAGGCCCTGCTGGAGTATGAAGCCGGCCGGGCTGG
CCCCGGAGGGGGTGCTGAGCGGCGGCGGGCAGGCAGGTTGCTGCTCACGCTACCGCTCCTCCGCCAGACAGCAGGCAAAG
TGCTGGCCCATTTCTATGGGGTGAAGCTGGAGGGCAAGGTGCCCATGCACAAGCTGTTCTTGGAGATGCTCGAGGCCATG
ATGGACTAA
TTGTGTCCTACAAGCAGCCGGGCGCCGCCAAGTGAGGGGACGCGGCGCGGTGGGGCGGCGCGGCCCGAGGAGGCGGCGGA
GGAGGGGCCGCCCGCGGCCCCCGGCTCACCCCGGCATTCCGGGCCGCTCGGCCCCCATGCCTGCCCGCCAGCCCTGCCGG
AGCCCCAGGTGACCAGCGCCATGTCCAGCCAGGTGGTGGGCATTGAGCCTCTATACATCAAGGCAGAGCCAGCCAGCCCC
GACAGTCCAAAGGGTTCCTCAGAGACGGAGACCGAGCCTCCTGTGACCCTTGCCCCTGGTCCAGCTCCCACCCGCTGCCT
CCCAGGCCATAAGGAAGAGGAGGATGGGGAGGGGGCTGGGCCTGGCGAGCAGGGTGGTGGGAAGCTGGTGCTCAGCTCCC
TGCCCAAGCGCCTCTGCCTGGTCTGTGGGGATGTGGCCTCCGGCTACCACTACGGTGTGGCATCCTGTGAGGCCTGCAAA
GCCTTCTTCAAGAGGACCATCCAGGGGAGCATCGAGTACAGCTGTCCAGCTTCCAATGAGTGTGAGATCACCAAGCGGAG
ACGCAAGGCCTGCCAGGCCTGCCGCTTCACCAAGTGCCTGCGGGTGGGCATGCTCAAGGAGGGAGTACGCCTGGACCGCG
TCCGGGGTGGGCGGCAGAAGTACAAGCGGCGGCCAGAGGTGGACCCGCTGCCCTTCCCAGGCCCCTTCCCTGCTGGGCCC
CTGGCAGTAGCTGGAGGCCCCCGGAAGACAGCAGCCCCAGTGAATGCACTGGTGTCTCATCTGCTGGTCGTGGAGCCTGA
GAAACTCTATGCCATGCCTGACCCTGCGGGCCCTGATGGGCACCTCCCAGCCGTGGCTACCCTCTGTGACCTCTTTGACC
GAGAGATTGTGGTCACCATCAGCTGGGCCAAGAGCATCCCAGGCTTCTCATCGCTGTCGCTGTCTGACCAGATGTCAGTA
CTGCAGAGCGTGTGGATGGAGGTGCTGGTGCTGGGTGTGGCCCAGCGCTCACTGCCACTGCAGGATGAGCTGGCCTTCGC
TGAGGACTTAGTCCTGGATGAAGAGGGGGCTCGGGCAGCTGGCCTAGGGGAACTAGGGGCTGCGCTGCTGCAGCTGGTGC
GGCGACTGCAGGCCCTCCGATTGGAGCGAGAGGAGTATGTCCTCCTGAAGGCCCTGGCCCTTGCCAATTCAGACTCTGTG
CACATTGAAGATGCCGAGCTGTGGAGCAGCTGCGAGAAGCTGCACGAGGCCCTGCTGGAGTATGAAGCCGGCCGGGCTGG
CCCCGGAGGGGGTGCTGAGCGGCGGCGGGCAGGCAGGTTGCTGCTCACGCTACCGCTCCTCCGCCAGACAGCAGGCAAAG
TGCTGGCCCATTTCTATGGGGTGAAGCTGGAGGGCAAGGTGCCCATGCACAAGCTGTTCTTGGAGATGCTCGAGGCCATG
ATGGACTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 6 .34 RPM |
| SRP051959_skeletal_muscle | 19 .96 RPM |
| SRP051959_lymph_node | 7 .47 RPM |
| SRP051959_lung | 6 .62 RPM |
| SRP051959_liver | 11 .85 RPM |
| SRP051959_kidney | 24 .67 RPM |
| SRP051959_heart | 14 .08 RPM |
| SRP051959_colon | 21 .85 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000020709 | within_species_paralog | 1 retrogene | |
| Echinops telfairi | ENSETEG00000000262 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000173153 | ortholog_one2one | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000001333 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000017803 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000004971 | ortholog_one2one | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000003107 | ortholog_one2many | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000003833 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_3845 | 78.30 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_3982 | 77.46 | 74.47 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_4023 | 81.61 | 93.62 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000018030 retrocopies