Parental gene: | PSMC1, ENSCJAG00000017701 |
| Aliases: | None |
| Description: | proteasome (prosome, macropain) 26S subunit, ATPase, 1 [Source:HGNC Symbol;Acc:9547] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 10:115799590..115813801(+) |
>ENSCJAG00000017701
ATGGGTCAAAGTCAGAGTGGTGGTCATGGCCCTGGAGGTGGCAAGAAGGATGACAAGGACAAGAAAAAGAAATATGAACC
TCCTGTACCAACTAGAGTGGGGAAAAAGAAGAAGAAAACAAAGGGACCAGATGCTGCCAGCAAATTGCCACTGGTGACAC
CTCACACTCAATGCCGGTTAAAATTACTGAAATTAGAGAGAATTAAAGACTACCTTCTCATGGAGGAAGAATTCATTAGA
AATCAGGAACAAATGAAACCATTAGAAGAAAAGCAAGAGGAGGAAAGATCAAAAGTGGATGATCTGAGGGGCACCCCGAT
GTCAGTAGGAACCTTGGAAGAGATCATCGATGACAATCATGCCATCGTGTCTACATCTGTGGGCTCAGAACACTACGTCA
GCATTCTGTCATTTGTAGACAAGGATCTGCTGGAACCTGGCTGCTCAGTCCTGCTCAACCACAAGGTGCATGCTGTTATA
GGGGTGCTGATGGATGACACAGATCCCCTGGTCACAGTGATGAAGGTAGAAAAGGCCCCCCAGGAGACCTATGCCGATAT
TGGGGGCTTAGACAACCAAATTCAGGAAATTAAGGAATCTGTGGAGCTTCCTCTCACCCACCCTGAATATTATGAAGAGA
TGGGTATAAAGCCTCCTAAGGGGGTCATTCTCTATGGTCCACCTGGCACAGGTAAAACCTTGTTAGCCAAGGCAGTAGCA
AACCAAACCTCAGCCACTTTCTTGAGAGTGGTTGGCTCTGAACTTATTCAGAAGTACCTAGGTGATGGGCCCAAACTCGT
ACGGGAACTGTTTCGAGTTGCTGAAGAACATGCACCATCCATCGTGTTTATTGATGAAATTGACGCCATTGGGACTAAAA
GATATGACTCAAATTCTGGTGGTGAGAGAGAAATTCAGCGAACAATGTTGGAACTGTTGAACCAGTTGGATGGATTTGAT
TCTAGGGGAGATGTGAAAGTTATCATGGCCACAAACCGAATAGAAACTTTGGATCCAGCACTTATCAGACCAGGCCGCAT
TGACAGGAAGATCGAGTTCCCCCTGCCTGATGAAAAGACTAAGAAGCGCATCTTTCAGATTCACACAAGCAGGATGACGC
TGGCTGATGATGTAACCCTGGACGACTTGATCATGGCTAAAGATGACCTCTCTGGTGCTGACATCAAGGCAATCTGTACA
GAAGCTGGTCTGATGGCCTTAAGAGAACGTAGAATGAAAGTAACAAATGAAGACTTCAAAAAATCTAAAGAAAATGTTCT
TTATAAGAAACAGGAAGGTACCCCTGAGGGGCTCTATCTCTAG
ATGGGTCAAAGTCAGAGTGGTGGTCATGGCCCTGGAGGTGGCAAGAAGGATGACAAGGACAAGAAAAAGAAATATGAACC
TCCTGTACCAACTAGAGTGGGGAAAAAGAAGAAGAAAACAAAGGGACCAGATGCTGCCAGCAAATTGCCACTGGTGACAC
CTCACACTCAATGCCGGTTAAAATTACTGAAATTAGAGAGAATTAAAGACTACCTTCTCATGGAGGAAGAATTCATTAGA
AATCAGGAACAAATGAAACCATTAGAAGAAAAGCAAGAGGAGGAAAGATCAAAAGTGGATGATCTGAGGGGCACCCCGAT
GTCAGTAGGAACCTTGGAAGAGATCATCGATGACAATCATGCCATCGTGTCTACATCTGTGGGCTCAGAACACTACGTCA
GCATTCTGTCATTTGTAGACAAGGATCTGCTGGAACCTGGCTGCTCAGTCCTGCTCAACCACAAGGTGCATGCTGTTATA
GGGGTGCTGATGGATGACACAGATCCCCTGGTCACAGTGATGAAGGTAGAAAAGGCCCCCCAGGAGACCTATGCCGATAT
TGGGGGCTTAGACAACCAAATTCAGGAAATTAAGGAATCTGTGGAGCTTCCTCTCACCCACCCTGAATATTATGAAGAGA
TGGGTATAAAGCCTCCTAAGGGGGTCATTCTCTATGGTCCACCTGGCACAGGTAAAACCTTGTTAGCCAAGGCAGTAGCA
AACCAAACCTCAGCCACTTTCTTGAGAGTGGTTGGCTCTGAACTTATTCAGAAGTACCTAGGTGATGGGCCCAAACTCGT
ACGGGAACTGTTTCGAGTTGCTGAAGAACATGCACCATCCATCGTGTTTATTGATGAAATTGACGCCATTGGGACTAAAA
GATATGACTCAAATTCTGGTGGTGAGAGAGAAATTCAGCGAACAATGTTGGAACTGTTGAACCAGTTGGATGGATTTGAT
TCTAGGGGAGATGTGAAAGTTATCATGGCCACAAACCGAATAGAAACTTTGGATCCAGCACTTATCAGACCAGGCCGCAT
TGACAGGAAGATCGAGTTCCCCCTGCCTGATGAAAAGACTAAGAAGCGCATCTTTCAGATTCACACAAGCAGGATGACGC
TGGCTGATGATGTAACCCTGGACGACTTGATCATGGCTAAAGATGACCTCTCTGGTGCTGACATCAAGGCAATCTGTACA
GAAGCTGGTCTGATGGCCTTAAGAGAACGTAGAATGAAAGTAACAAATGAAGACTTCAAAAAATCTAAAGAAAATGTTCT
TTATAAGAAACAGGAAGGTACCCCTGAGGGGCTCTATCTCTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 22 .48 RPM |
| SRP051959_skeletal_muscle | 57 .61 RPM |
| SRP051959_lymph_node | 18 .06 RPM |
| SRP051959_lung | 19 .50 RPM |
| SRP051959_liver | 29 .85 RPM |
| SRP051959_kidney | 27 .04 RPM |
| SRP051959_heart | 26 .31 RPM |
| SRP051959_colon | 22 .32 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000017510 | possible_ortholog | 2 retrogenes | |
| Choloepus hoffmanni | ENSCHOG00000013595 | ortholog_one2one | 1 retrogene | |
| Dasypus novemcinctus | ENSDNOG00000006458 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000100764 | ortholog_one2one | 10 retrogenes | |
| Gorilla gorilla | ENSGGOG00000010620 | ortholog_one2one | 8 retrogenes | |
| Macropus eugenii | ENSMEUG00000001526 | ortholog_one2one | 1 retrogene | |
| Microcebus murinus | ENSMICG00000016733 | ortholog_one2one | 7 retrogenes | |
| Macaca mulatta | ENSMMUG00000022990 | ortholog_one2many | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000017013 | ortholog_one2one | 10 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000006231 | possible_ortholog | 4 retrogenes | |
| Otolemur garnettii | ENSOGAG00000032343 | ortholog_one2many | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000025948 | ortholog_one2many | 9 retrogenes | |
| Pan troglodytes | ENSPTRG00000006623 | ortholog_one2one | 9 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_661 | 88.64 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_678 | 90.45 | 99.77 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_1152 | 98.86 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cjac_1537 | 77.33 | 55.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_cjac_2417 | 83.90 | 99.77 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_cjac_2433 | 81.92 | 60.91 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_cjac_4219 | 90.27 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000017701 retrocopies