Parental gene:

PPIL1, ENSCJAG00000016094

Aliases:None
Description:peptidylprolyl isomerase (cyclophilin)-like 1 [Source:HGNC Symbol;Acc:9260]
Organism:Marmoset (Callithrix jacchus)
Coordinates:4:37849339..37870510(-)


>ENSCJAG00000016094
ATGGCGGCAATTCCCCCTGACTCCTGGCAGCCACCCAACGTTTACTTGGAGACCAGCATGGGAATCATTGTGCTGGAGCT
GTACTGGAAGCATGCTCCAAAGACCTGTAAGAACTTTGCTGAGTTGGCTCGTCGAGGTTACTACAATGGCACAAAATTCC
ACAGAATTATCAAGGACTTCATGATTCAAGGGGGTGACCCAACAGGGACAGGTCGAGGTGGTGCATCTATCTATGGCAAA
CAGTTTGAAGACGAACTTCATCCAGACTTGAAATTCACAGGGGCTGGAATTCTCGCAATGGCCAATGCGGGGCCAGACAC
CAATGGCAGCCAATTCTTTGTGACCCTCGCCCCCACCCAGTGGCTTGATGGCAAACACACCATTTTTGGCCGAGTGTGCC
AGGGCATAGGAATGGTGAATCGCGTGGGAATGGTAGAAACAAACTCCCAGGACCGCCCTGTGGATGACGTGAAGATCATT
AAGGCATACCCTTCTGGGTAG

Library Parental gene expression (RPM)
SRP051959_spleen 7 .42 RPM
SRP051959_skeletal_muscle 1 .88 RPM
SRP051959_lymph_node 8 .58 RPM
SRP051959_lung 5 .63 RPM
SRP051959_liver 4 .07 RPM
SRP051959_kidney 6 .10 RPM
SRP051959_heart 5 .60 RPM
SRP051959_colon 6 .88 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000000213 ortholog_one2many 1 retrogene
retro_amel_30,
Bos taurus ENSBTAG00000002376 ortholog_one2one 1 retrogene
retro_btau_854,
Choloepus hoffmanni ENSCHOG00000006001 ortholog_one2one 1 retrogene
retro_chof_250,
Callithrix jacchus ENSCJAG00000003145 within_species_paralog 5 retrogenes
retro_cjac_129, retro_cjac_1886, retro_cjac_2205, retro_cjac_3120, retro_cjac_4110,
Callithrix jacchus ENSCJAG00000019613 other_paralog 1 retrogene
retro_cjac_2963,
Erinaceus europaeus ENSEEUG00000009371 ortholog_one2one 1 retrogene
retro_eeur_204,
Homo sapiens ENSG00000137168 ortholog_one2one 1 retrogene
retro_hsap_2086,
Gorilla gorilla ENSGGOG00000027071 ortholog_one2one 1 retrogene
retro_ggor_1630,
Loxodonta africana ENSLAFG00000028161 ortholog_one2one 2 retrogenes
retro_lafr_1187, retro_lafr_435,
Macropus eugenii ENSMEUG00000000997 ortholog_one2one 1 retrogene
retro_meug_1008,
Myotis lucifugus ENSMLUG00000002299 ortholog_one2many 1 retrogene
retro_mluc_69,
Monodelphis domestica ENSMODG00000013502 ortholog_one2one 2 retrogenes
retro_mdom_500, retro_mdom_997,
Mustela putorius furo ENSMPUG00000014166 ortholog_one2many 1 retrogene
retro_mputfur_29,
Nomascus leucogenys ENSNLEG00000010779 ortholog_one2one 1 retrogene
retro_nleu_2135,
Oryctolagus cuniculus ENSOCUG00000007046 ortholog_one2one 2 retrogenes
retro_ocun_1493, retro_ocun_1759,
Otolemur garnettii ENSOGAG00000011275 ortholog_one2one 3 retrogenes
retro_ogar_1484, retro_ogar_2850, retro_ogar_939,
Ochotona princeps ENSOPRG00000006059 ortholog_one2one 3 retrogenes
retro_opri_1054, retro_opri_238, retro_opri_641,
Procavia capensis ENSPCAG00000015572 ortholog_one2one 1 retrogene
retro_pcap_426,
Pongo abelii ENSPPYG00000016554 ortholog_one2one 1 retrogene
retro_pabe_2009,
Pan troglodytes ENSPTRG00000018111 ortholog_one2one 1 retrogene
retro_ptro_1535,
Sus scrofa ENSSSCG00000030390 ortholog_one2one 1 retrogene
retro_sscr_472,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1302 81.89 76.51
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Download FASTA sequences of all ENSCJAG00000016094 retrocopies