Parental gene:

HNRNPDL, ENSCJAG00000015197

Aliases:None
Description:heterogeneous nuclear ribonucleoprotein D-like [Source:HGNC Symbol;Acc:5037]
Organism:Marmoset (Callithrix jacchus)
Coordinates:3:111824483..111831498(+)


>ENSCJAG00000015197
ATGGAGGTCCCGCCTCGGCTTTCCCATGTGCCGCCGCCATTGTTCCCCTCCGCTCCCGCTACTTTAGCCTCCCGCAACCT
CTCCCATTGGCGGCCGCGGGCGCCGCGACAGCTTGCCCCGCTCCTCCCTTCGCTCGCTGCCAGCTCCGCCCGGCAGGGGG
CGCGCCGGGCCCAGCGCCACGTCACCGCCCAGCAGCCCTCCCGATTGGCGGGCGGGGCAGCTATAAAGGGAGGGCGCAGG
CGGCGCCCGGATCTCTTCCGCCGCCATTTTAAATCCGGCTCCATACAACGCTCCGCCGCTGCTGCTGCCGCGACCCGGAC
TGCGCGCCAGCACCCCCCTGCCGACAGCTCCGCCGCTATGGAGGACATGAACGAGTACAGCAACATAGAGGAATTCGCAG
AGGGATCCAAGATCAATGCGAGCAAGAATCAGCAGGATGACGGTAAAATGTTTATTGGAGGCTTGAGCTGGGATACAAGC
AAAAAAGATCTGACTGAATATTTGTCTCGATTTGGGGAAGTTGTAGACTGCACAATTAAAACAGATCCAGTCACTGGGAG
ATCAAGAGGATTTGGATTTGTGCTTTTCAAAGATGCTGCTAGTGTTGATAAGGTTTTGGAACTGAAAGAACACAAACTGG
ATGGCAAATTGATAGATCCCAAAAGGGCCAAAGCTTTAAAAGGGAAAGAACCTCCCAAAAAGGTTTTTGTGGGTGGATTG
AGCCCGGATACTTCTGAAGAACAAATTAAAGAATATTTTGGAGCCTTTGGAGAGATTGAAAACATTGAACTTCCCATGGA
TACAAAAACAAATGAGAGAAGAGGATTTTGTTTTATCACATATACCGATGAAGAGCCAGTAAAAAAATTGTTAGAAAGCA
GATATCATCAGATTGGTTCTGGGAAGTGTGAAATAAAAGTTGCACAACCCAAAGAGGTATATAGGCAGCAACAGCAACAA
CAAAAAGGTGGAAGAGGTGCTGCAGCTGGTGGACGAGGTGGTACAAGGGGTCGTGGCCGAGGTCAGGGCCAAAACTGGAA
CCAAGGATTTAATAACTATTATGATCAAGGATATGGAAATTACAATAGTGCCTATGGTGGTGATCAAAACTATAGTGGCT
ATGGCGGATATGATTATACTGGGTATAACTATGGGAACTATGGATATGGACAGGGATATGCAGACTACAGTGGCCAACAG
AGCACTTATGGCAAGGCATCTCGAGGGGGTGGCAATCACCAAAATAATTACCAGCCATACTAA

Library Parental gene expression (RPM)
SRP051959_spleen 110 .84 RPM
SRP051959_skeletal_muscle 67 .81 RPM
SRP051959_lymph_node 110 .34 RPM
SRP051959_lung 92 .27 RPM
SRP051959_liver 58 .46 RPM
SRP051959_kidney 92 .78 RPM
SRP051959_heart 73 .46 RPM
SRP051959_colon 43 .44 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000007908 within_species_paralog 2 retrogenes
retro_cjac_2285, retro_cjac_3041,
Callithrix jacchus ENSCJAG00000015165 within_species_paralog 1 retrogene
retro_cjac_2796,
Dasypus novemcinctus ENSDNOG00000003887 possible_ortholog 7 retrogenes
retro_dnov_1175, retro_dnov_1182, retro_dnov_144, retro_dnov_1603, retro_dnov_31, retro_dnov_723, retro_dnov_930,
Felis catus ENSFCAG00000000455 ortholog_one2one 1 retrogene
retro_fcat_1568,
Macropus eugenii ENSMEUG00000011454 ortholog_one2one 7 retrogenes
retro_meug_1252, retro_meug_1378, retro_meug_1491, retro_meug_1971, retro_meug_2165, retro_meug_249, retro_meug_766,
Monodelphis domestica ENSMODG00000011916 possible_ortholog 6 retrogenes
retro_mdom_1496, retro_mdom_1789, retro_mdom_1951, retro_mdom_2017, retro_mdom_546, retro_mdom_981,
Otolemur garnettii ENSOGAG00000002501 possible_ortholog 4 retrogenes
retro_ogar_2717, retro_ogar_2791, retro_ogar_437, retro_ogar_693,
Ictidomys tridecemlineatus ENSSTOG00000013979 ortholog_one2one 1 retrogene
retro_itri_1177,
Tursiops truncatus ENSTTRG00000001793 ortholog_one2one 2 retrogenes
retro_ttru_1486, retro_ttru_744,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2589 95.54 80.00
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Download FASTA sequences of all ENSCJAG00000015197 retrocopies