Parental gene: | EIF4A1, ENSCJAG00000015114 |
| Aliases: | None |
| Description: | eukaryotic initiation factor 4A-I [Source:RefSeq peptide;Acc:NP_001192066] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 5:74269212..74275993(-) |
>ENSCJAG00000015114
ATGTCTGCGAGTCAGGATTCCCGATCCAGAGACAATGGCCCTGATGGGATGGAGCCCGAAGGCGTCATCGAGAGTAACTG
GAATGAGATTGTTGACAGCTTTGATGACATGAACCTCTCGGAGTCCCTTCTCCGTGGCATCTACGCCTATGGTTTTGAGA
AGCCTTCTGCCATCCAGCAGCGAGCCATTCTACCTTGTATCAAGGGTTATGACGTGATTGCTCAAGCCCAATCTGGGACT
GGGAAAACGGCCACATTTGCCATATCGATTCTGCAGCAGATTGAGTTAGATCTAAAGGCCACCCAGGCCTTGGTCCTAGC
GCCCACTCGAGAATTGGCTCAGCAGGCTCAGATACAGAAGGTGGTTATGGCACTAGGAGACTACATGGGTGCCTCCTGTC
ACGCCTGTATTGGGGGCACCAATGTTCGTGCTGAGGTGCAGAAACTGCAGATGGAAGCTCCCCATATCATCGTGGGAACC
CCTGGCCGTGTGTTCGATATGCTTAACCGGAGGTACCTGTCTCCCAAATACATCAAAATGTTTGTACTGGACGAAGCTGA
TGAAATGTTAAGCCGTGGATTCAAGGACCAGATCTATGACATCTTCCAAAAGCTCAACAGCAACACCCAGGTAGTTTTGC
TGTCAGCTACAATGCCTTCTGACGTGCTTGAGGTGACCAAGAAGTTCATGAGGGACCCCATTCGGATTCTTGTCAAGAAG
GAAGAGTTGACCTTGGAGGGTATCCGCCAATTCTACATCAATGTGGAACGAGAGGAATGGAAGCTGGACACACTGTGTGA
CTTGTATGAAACCCTGACCATCACCCAGGCAGTCATCTTCATCAACACCCGAAGGAAGGTGGACTGGCTCACTGAGAAGA
TGCATGCTCGAGATTTCACTGTCTCTGCCATGCATGGAGATATGGACCAAAAGGAACGAGATGTAATCATGAGGGAATTT
CGTTCTGGCTCTAGCAGAGTTTTGATTACCACAGACCTACTGGCCAGAGGCATTGATGTGCAGCAGGTTTCTTTAGTCAT
CAACTATGACCTTCCCACCAACAGGGAAAACTATATCCACAGAATCGGTCGAGGTGGACGGTTTGGCCGTAAGGGTGTGG
CTATTAACATGGTGACAGAAGAAGACAAGCGGACTCTTCGAGACATAGAGACCTTCTACAACACCTCCATTGAGGAAATG
CCCCTCAATGTTGCTGACCTCATCTGA
ATGTCTGCGAGTCAGGATTCCCGATCCAGAGACAATGGCCCTGATGGGATGGAGCCCGAAGGCGTCATCGAGAGTAACTG
GAATGAGATTGTTGACAGCTTTGATGACATGAACCTCTCGGAGTCCCTTCTCCGTGGCATCTACGCCTATGGTTTTGAGA
AGCCTTCTGCCATCCAGCAGCGAGCCATTCTACCTTGTATCAAGGGTTATGACGTGATTGCTCAAGCCCAATCTGGGACT
GGGAAAACGGCCACATTTGCCATATCGATTCTGCAGCAGATTGAGTTAGATCTAAAGGCCACCCAGGCCTTGGTCCTAGC
GCCCACTCGAGAATTGGCTCAGCAGGCTCAGATACAGAAGGTGGTTATGGCACTAGGAGACTACATGGGTGCCTCCTGTC
ACGCCTGTATTGGGGGCACCAATGTTCGTGCTGAGGTGCAGAAACTGCAGATGGAAGCTCCCCATATCATCGTGGGAACC
CCTGGCCGTGTGTTCGATATGCTTAACCGGAGGTACCTGTCTCCCAAATACATCAAAATGTTTGTACTGGACGAAGCTGA
TGAAATGTTAAGCCGTGGATTCAAGGACCAGATCTATGACATCTTCCAAAAGCTCAACAGCAACACCCAGGTAGTTTTGC
TGTCAGCTACAATGCCTTCTGACGTGCTTGAGGTGACCAAGAAGTTCATGAGGGACCCCATTCGGATTCTTGTCAAGAAG
GAAGAGTTGACCTTGGAGGGTATCCGCCAATTCTACATCAATGTGGAACGAGAGGAATGGAAGCTGGACACACTGTGTGA
CTTGTATGAAACCCTGACCATCACCCAGGCAGTCATCTTCATCAACACCCGAAGGAAGGTGGACTGGCTCACTGAGAAGA
TGCATGCTCGAGATTTCACTGTCTCTGCCATGCATGGAGATATGGACCAAAAGGAACGAGATGTAATCATGAGGGAATTT
CGTTCTGGCTCTAGCAGAGTTTTGATTACCACAGACCTACTGGCCAGAGGCATTGATGTGCAGCAGGTTTCTTTAGTCAT
CAACTATGACCTTCCCACCAACAGGGAAAACTATATCCACAGAATCGGTCGAGGTGGACGGTTTGGCCGTAAGGGTGTGG
CTATTAACATGGTGACAGAAGAAGACAAGCGGACTCTTCGAGACATAGAGACCTTCTACAACACCTCCATTGAGGAAATG
CCCCTCAATGTTGCTGACCTCATCTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 103 .49 RPM |
| SRP051959_skeletal_muscle | 69 .60 RPM |
| SRP051959_lymph_node | 96 .91 RPM |
| SRP051959_lung | 100 .79 RPM |
| SRP051959_liver | 195 .66 RPM |
| SRP051959_kidney | 99 .26 RPM |
| SRP051959_heart | 66 .55 RPM |
| SRP051959_colon | 121 .41 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000016753 | ortholog_one2one | 1 retrogene | |
| Dipodomys ordii | ENSDORG00000014225 | ortholog_one2one | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000010780 | ortholog_one2many | 2 retrogenes | |
| Microcebus murinus | ENSMICG00000014759 | ortholog_one2one | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000003415 | possible_ortholog | 3 retrogenes | |
| Macaca mulatta | ENSMMUG00000013499 | possible_ortholog | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000007090 | ortholog_one2many | 3 retrogenes | |
| Otolemur garnettii | ENSOGAG00000008132 | ortholog_one2one | 2 retrogenes | |
| Ochotona princeps | ENSOPRG00000008591 | ortholog_one2one | 2 retrogenes | |
| Sorex araneus | ENSSARG00000006017 | possible_ortholog | 7 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_395 | 78.47 | 50.98 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_727 | 96.58 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_1876 | 89.19 | 99.26 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cjac_2046 | 76.36 | 76.23 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_cjac_2521 | 78.78 | 59.31 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_cjac_2679 | 80.00 | 70.59 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_cjac_3086 | 93.38 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_cjac_3203 | 86.84 | 64.22 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000015114 retrocopies