Parental gene: | RBMS1, ENSCJAG00000014861 |
| Aliases: | None |
| Description: | RNA binding motif, single stranded interacting protein 1 [Source:HGNC Symbol;Acc:9907] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 6:58499974..58718834(+) |
>ENSCJAG00000014861
ATGGGCAAAGTGTGGAAACAGCAGATGTACCCTCAGTACGCCACCTACTACTACCCTCAGTATCTGCAAGCGAAGCAGTC
TCTGGTCCCAGCCCACCCCATGGCCCCTCCCAGTCCCAGCACCACCAGCAGTAATAACAACAGTAGCAGCAGTAGCAACT
CAGGATGGGATCAGCTCAGCAAAACGAACCTCTATATCCGAGGACTGCCTCCCCACACCACCGACCAGGACCTGGTGAAG
CTCTGTCAACCATATGGGAAAATAGTCTCCACAAAGGCAATATTGGATAAGACAACGAACAAATGCAAAGGTTACGGTTT
TGTGGACTTTGACAGCCCTGCCGCAGCTCAAAAAGCTGTGTCTGCCCTGAAGGCCAGTGGGGTTCAAGCTCAAATGGCAA
AGCAACAGGAACAAGATCCTACCAACCTGTACATTTCTAATTTGCCACTCTCCATGGATGAGCAAGAACTGGAAAATATG
CTCAAACCATTTGGACAGGTTATTTCTACAAGGATACTGCGTGATTCCAGTGGTACAAGTCGTGGTGTTGGCTTTGCTAG
GATGGAATCAACAGAAAAATGCGAAGCTGTTATTGGTCATTTTAATGGAAAATTTATTAAGACACCACCAGGAGTTTCTG
CCCCCACAGAACCTTTATTGTGTAAGTTTGCGGATGGAGGACAGAAAAAGAGACAGAACCCAAACAAATACATCCCTAAT
GGAAGACCATGGCATAGAGAAGGAGAGGTGAGACTTGCTGGAATGACACTTACTTACGACCCAACTACAGCTGCTCTACA
GAACGGATTTTATCCTTCACCATACAGTATTGCTACAAACCGAATGATCACTCAAACTTCTATTACACCCTATATTGCAT
CTCCTGTATCTGCCTACCAGGTGCAAAGTCCTTCTTGGATGCAACCCCAACCATATATTCTACAGCACCCCGGTGCCGTG
CTAACTCCCTCAATGGAGCACACCATGTCACTACAGCCCGCATCAATGATCAGCCCTCTGGCCCAGCAGATGAGTCATCT
GTCGCTAGGCAGCACTGGAACATACATGCCTGCAACATCAGCTATGCAAGGAGCCTACTTGCCACAGTATGCACATATGC
AGACGACAGCAGTTCCTGTTGAGGAGGCAAGTGGTCAACAGCAGGTGGCTGTCGAGACGTCTAATGACCATTCTCCATAT
ACCTTTCAACCCAATAAGTAA
ATGGGCAAAGTGTGGAAACAGCAGATGTACCCTCAGTACGCCACCTACTACTACCCTCAGTATCTGCAAGCGAAGCAGTC
TCTGGTCCCAGCCCACCCCATGGCCCCTCCCAGTCCCAGCACCACCAGCAGTAATAACAACAGTAGCAGCAGTAGCAACT
CAGGATGGGATCAGCTCAGCAAAACGAACCTCTATATCCGAGGACTGCCTCCCCACACCACCGACCAGGACCTGGTGAAG
CTCTGTCAACCATATGGGAAAATAGTCTCCACAAAGGCAATATTGGATAAGACAACGAACAAATGCAAAGGTTACGGTTT
TGTGGACTTTGACAGCCCTGCCGCAGCTCAAAAAGCTGTGTCTGCCCTGAAGGCCAGTGGGGTTCAAGCTCAAATGGCAA
AGCAACAGGAACAAGATCCTACCAACCTGTACATTTCTAATTTGCCACTCTCCATGGATGAGCAAGAACTGGAAAATATG
CTCAAACCATTTGGACAGGTTATTTCTACAAGGATACTGCGTGATTCCAGTGGTACAAGTCGTGGTGTTGGCTTTGCTAG
GATGGAATCAACAGAAAAATGCGAAGCTGTTATTGGTCATTTTAATGGAAAATTTATTAAGACACCACCAGGAGTTTCTG
CCCCCACAGAACCTTTATTGTGTAAGTTTGCGGATGGAGGACAGAAAAAGAGACAGAACCCAAACAAATACATCCCTAAT
GGAAGACCATGGCATAGAGAAGGAGAGGTGAGACTTGCTGGAATGACACTTACTTACGACCCAACTACAGCTGCTCTACA
GAACGGATTTTATCCTTCACCATACAGTATTGCTACAAACCGAATGATCACTCAAACTTCTATTACACCCTATATTGCAT
CTCCTGTATCTGCCTACCAGGTGCAAAGTCCTTCTTGGATGCAACCCCAACCATATATTCTACAGCACCCCGGTGCCGTG
CTAACTCCCTCAATGGAGCACACCATGTCACTACAGCCCGCATCAATGATCAGCCCTCTGGCCCAGCAGATGAGTCATCT
GTCGCTAGGCAGCACTGGAACATACATGCCTGCAACATCAGCTATGCAAGGAGCCTACTTGCCACAGTATGCACATATGC
AGACGACAGCAGTTCCTGTTGAGGAGGCAAGTGGTCAACAGCAGGTGGCTGTCGAGACGTCTAATGACCATTCTCCATAT
ACCTTTCAACCCAATAAGTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 45 .50 RPM |
| SRP051959_skeletal_muscle | 15 .37 RPM |
| SRP051959_lymph_node | 22 .76 RPM |
| SRP051959_lung | 42 .69 RPM |
| SRP051959_liver | 14 .56 RPM |
| SRP051959_kidney | 27 .00 RPM |
| SRP051959_heart | 33 .71 RPM |
| SRP051959_colon | 15 .49 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000002512 | other_paralog | 3 retrogenes | |
| Callithrix jacchus | ENSCJAG00000010803 | within_species_paralog | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000015833 | other_paralog | 5 retrogenes | |
| Homo sapiens | ENSG00000153250 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_1040 | 95.81 | 94.09 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000014861 retrocopies