Parental gene: | ENSCJAG00000012916 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 19:6445875..6483723(-) |
>ENSCJAG00000012916
ATGGCAGCTGCCGTTCCGACCTCACGTGTGAGTGCGGGGGGAAATCTGAAAAAGACCCCAAAGAAGAAGATGAAAATGGC
AACCGGAGCCGTAGCGTCGGTGCTGGAAGAGGAGGGCACAGACGGTTCCGATAGCGAAGGAAGCAGTGGACCAGAATATG
ACGACTTTTATTCTGATGAGGAAGCAATAGAAGCTGACAATGAGAGTGATGCTGAGCCCCATGACGAAGAAAATGAAGAT
GACGCAGAATCAAATCCTGGGACCAATATGGGCTGGGCAGATGCCATGGCTAAAGTTCTCAACAAGAAAACTCCTGAAAG
TAAACCTACTATTCTGGTCAAAAATAAGAAGCTGGAAAAGGAAAAAGAAAAGTTAAAGCAAGAAAGACAAGAGAAAATAA
AACAGCGTGATAAGAGGATGGAGTGGGAAATGATGTGCAGAGTAAAGCCAGATGTTGTCCAAGACAAGGAGACAGAGAGA
AATCTTCAGAGAATTGCAACGAGGGGTGTGGTGCAGTTATTTAATGCTGTTCAGAAACATCAAAAGAACGTTGATGAGAA
GGTTAAAGAAGCTGGAAGCTCTATTAGAAAGCGAACTAAGTTGATATCAACTGTTTCCAAGAAAGATTTTATCAGTGTTT
TGAGAGGAATGGATGAAAGTACAAATGAGACTACCTCAGGCAAGAAGAAACCAAAAGCCAAACAGACTGAAGTGAAATCA
GAAGAGGGCCCAGGTTGGACGATCCTACGTGACGATTTCATGATGGGAGCATCTATGAAAGACTGGGACAAGGAAAGTGA
TGGGCCAGATGACAGCAGACCAGAATCTGCAAGTGACTCTGATACATAA
ATGGCAGCTGCCGTTCCGACCTCACGTGTGAGTGCGGGGGGAAATCTGAAAAAGACCCCAAAGAAGAAGATGAAAATGGC
AACCGGAGCCGTAGCGTCGGTGCTGGAAGAGGAGGGCACAGACGGTTCCGATAGCGAAGGAAGCAGTGGACCAGAATATG
ACGACTTTTATTCTGATGAGGAAGCAATAGAAGCTGACAATGAGAGTGATGCTGAGCCCCATGACGAAGAAAATGAAGAT
GACGCAGAATCAAATCCTGGGACCAATATGGGCTGGGCAGATGCCATGGCTAAAGTTCTCAACAAGAAAACTCCTGAAAG
TAAACCTACTATTCTGGTCAAAAATAAGAAGCTGGAAAAGGAAAAAGAAAAGTTAAAGCAAGAAAGACAAGAGAAAATAA
AACAGCGTGATAAGAGGATGGAGTGGGAAATGATGTGCAGAGTAAAGCCAGATGTTGTCCAAGACAAGGAGACAGAGAGA
AATCTTCAGAGAATTGCAACGAGGGGTGTGGTGCAGTTATTTAATGCTGTTCAGAAACATCAAAAGAACGTTGATGAGAA
GGTTAAAGAAGCTGGAAGCTCTATTAGAAAGCGAACTAAGTTGATATCAACTGTTTCCAAGAAAGATTTTATCAGTGTTT
TGAGAGGAATGGATGAAAGTACAAATGAGACTACCTCAGGCAAGAAGAAACCAAAAGCCAAACAGACTGAAGTGAAATCA
GAAGAGGGCCCAGGTTGGACGATCCTACGTGACGATTTCATGATGGGAGCATCTATGAAAGACTGGGACAAGGAAAGTGA
TGGGCCAGATGACAGCAGACCAGAATCTGCAAGTGACTCTGATACATAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 5 .61 RPM |
| SRP051959_skeletal_muscle | 7 .64 RPM |
| SRP051959_lymph_node | 5 .91 RPM |
| SRP051959_lung | 6 .75 RPM |
| SRP051959_liver | 6 .91 RPM |
| SRP051959_kidney | 6 .79 RPM |
| SRP051959_heart | 7 .12 RPM |
| SRP051959_colon | 4 .33 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000000174 | ortholog_one2many | 1 retrogene | |
| Mus musculus | ENSMUSG00000001305 | ortholog_one2many | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000017863 | ortholog_many2many | 4 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000001244 | ortholog_one2many | 1 retrogene | |
| Tarsius syrichta | ENSTSYG00000012715 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_455 | 97.99 | 70.57 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_3789 | 83.02 | 56.03 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000012916 retrocopies