Parental gene:

ENSCJAG00000011795

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:13:21100619..21117651(+)


>ENSCJAG00000011795
ATGCCAGCAGCAACTGTAGATCATAGCCAAAGAATTTGTGAAGTTTGGGCTTGCAACTTGGATGAAGAGATGAAGAAAAT
TCGTCAAGTTATCCGAAAATATAATTATGTTGCTATGGACACCGAATTTCCGGGTGTAGTTGCAAGACCCATTGGAGAAT
TCAGAAGCAATGCTGACTATCAGTACCAACTACTGCGGTGTAATGTAGACTTGTTAAAGATAATTCAGCTAGGACTGACA
TTTATGAATGAACAAGGAGAATACCCTCCAGGAACTTCAACATGGCAGTTTAATTTTAAATTTAATTTGACGGAGGACAT
GTATGCCCAGGACTCTATAGAGCTGCTAACAACATCTGGTATCCAGTTTAAAAAACATGAGGAAGAAGGAATTGAGACCC
AGTACTTCGCAGAACTTCTCATGACTTCAGGAGTGGTCCTCTGTGAAGGGGTCAAATGGTTGTCATTTCATAGCGGTTAT
GACTTTGGCTATTTAATCAAAATCCTGACCAACTCTAACTTGCCTGAAGAAGAACTTGACTTCTTTGAGATCCTTAGATT
GTTTTTTCCTGTCATTTATGATGTGAAGTACCTCATGAAGAGCTGCAAAAATCTCAAAGGTGGATTACAGGAGGTGGCAG
AACAGTTAGAGCTGGAACGGATAGGACCACAACATCAGGCAGGATCTGATTCATTGCTCACAGGAATGGCCTTTTTCAAA
ATGAGAGAAATGTTCTTTGAAGATCATATTGATGATGCCAAATATTGTGGTCATTTGTATGGCCTTGGTTCTGGTTCATC
CTATGTACAGAATGGCACAGGGAATGCATATGAAGAGGAAGCCAACAAGCAGTCATGA

Library Parental gene expression (RPM)
SRP051959_spleen 24 .64 RPM
SRP051959_skeletal_muscle 17 .19 RPM
SRP051959_lymph_node 25 .48 RPM
SRP051959_lung 22 .27 RPM
SRP051959_liver 24 .48 RPM
SRP051959_kidney 23 .83 RPM
SRP051959_heart 17 .84 RPM
SRP051959_colon 20 .86 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000000677 ortholog_one2many 4 retrogenes
retro_chof_1431, retro_chof_1581, retro_chof_822, retro_chof_963,
Felis catus ENSFCAG00000000591 possible_ortholog 1 retrogene
retro_fcat_1889,
Homo sapiens ENSG00000198791 possible_ortholog 2 retrogenes
retro_hsap_211, retro_hsap_4851,
Macaca mulatta ENSMMUG00000001873 possible_ortholog 1 retrogene
retro_mmul_2592,
Monodelphis domestica ENSMODG00000019055 ortholog_one2many 2 retrogenes
retro_mdom_1898, retro_mdom_802,
Mustela putorius furo ENSMPUG00000017972 possible_ortholog 1 retrogene
retro_mputfur_1596,
Nomascus leucogenys ENSNLEG00000002489 possible_ortholog 2 retrogenes
retro_nleu_1860, retro_nleu_2373,
Oryctolagus cuniculus ENSOCUG00000014589 possible_ortholog 1 retrogene
retro_ocun_118,
Otolemur garnettii ENSOGAG00000006324 possible_ortholog 2 retrogenes
retro_ogar_1883, retro_ogar_505,
Pongo abelii ENSPPYG00000018385 possible_ortholog 2 retrogenes
retro_pabe_3771, retro_pabe_428,
Sarcophilus harrisii ENSSHAG00000011828 ortholog_one2many 2 retrogenes
retro_shar_103, retro_shar_631,
Ictidomys tridecemlineatus ENSSTOG00000009175 possible_ortholog 2 retrogenes
retro_itri_1729, retro_itri_1730,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_720 88.89 100.00
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Download FASTA sequences of all ENSCJAG00000011795 retrocopies