Parental gene:

CHMP1A, ENSCJAG00000010826

Aliases:None
Description:charged multivesicular body protein 1A [Source:HGNC Symbol;Acc:8740]
Organism:Marmoset (Callithrix jacchus)
Coordinates:20:44058987..44068015(-)


>ENSCJAG00000010826
ATGGACGATACCCTGTTCCAGTTGAAGTTCACAGCAAAGCAGCTAGAGAAGCTGGCCAAGAAGGCGGAGAAGGACTCCAA
GGCGGAGCAGGCCAAAGTGAAGAAGGCCCTTCAGCAGAAAAATGTAGAGTGTGCCCGTGTGTATGCCGAGAACGCCATCC
GCAAGAAGAACGAAGGTGTGAACTGGCTTCGAATGGCGTCCCGTGTAGACGCGGTGGCCTCCAAGGTGCAGACGGCTGTG
ACCATGAAGGGGGTGACCAAGAACATGGCCCAGGTGACCAAAGCCCTGGACAAGGCCCTGAGTACCATGGACCTGCAGAA
GGTCTCCACGGTGATGGACAGGTTTGAGCAGCAGGTGCAGAACCTGGATGTCCACACGTCGGTGATGGAGGACTCCATGA
GCTCGGCCACCACCCTGACCACACCGCAAGAGCAGGTGGACAGCCTCATCGTGCAGATTGCCGAGGAGAACGGCCTGGAG
GTGCTGGACCAGCTCAGCCAGCTGCCTGAGGGCGCCTCTGCTGTGGGCGAGAGCTCTGTGCGAAGCCAGGAAGACCAGCT
GTCCCGGAGGTTGGCTGCCTTGAGGAACTAG

Library Parental gene expression (RPM)
SRP051959_spleen 3 .55 RPM
SRP051959_skeletal_muscle 3 .65 RPM
SRP051959_lymph_node 4 .84 RPM
SRP051959_lung 4 .44 RPM
SRP051959_liver 2 .43 RPM
SRP051959_kidney 5 .06 RPM
SRP051959_heart 3 .75 RPM
SRP051959_colon 7 .01 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000001216 ortholog_one2one 1 retrogene
retro_amel_1749,
Bos taurus ENSBTAG00000033331 ortholog_one2one 1 retrogene
retro_btau_1048,
Canis familiaris ENSCAFG00000019822 ortholog_one2one 1 retrogene
retro_cfam_1866,
Homo sapiens ENSG00000131165 ortholog_one2one 2 retrogenes
retro_hsap_359, retro_hsap_75,
Macaca mulatta ENSMMUG00000014909 ortholog_one2one 3 retrogenes
retro_mmul_1325, retro_mmul_476, retro_mmul_706,
Mustela putorius furo ENSMPUG00000007281 ortholog_one2one 1 retrogene
retro_mputfur_383,
Mus musculus ENSMUSG00000000743 ortholog_one2one 1 retrogene
retro_mmus_2260,
Oryctolagus cuniculus ENSOCUG00000023371 ortholog_one2one 1 retrogene
retro_ocun_1508,
Otolemur garnettii ENSOGAG00000004883 ortholog_one2many 1 retrogene
retro_ogar_170,
Pongo abelii ENSPPYG00000007667 ortholog_one2one 1 retrogene
retro_pabe_344,
Pan troglodytes ENSPTRG00000008483 ortholog_one2one 2 retrogenes
retro_ptro_1278, retro_ptro_283,
Ictidomys tridecemlineatus ENSSTOG00000023813 ortholog_one2one 1 retrogene
retro_itri_1311,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1147 56.12 100.00
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Download FASTA sequences of all ENSCJAG00000010826 retrocopies