Parental gene:

ENSCJAG00000009625

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:12:19295210..19303209(-)


>ENSCJAG00000009625
ATGATCACCAAGACACACAAAGTAGACCTGTTCGCTGGGCTCCCAGAGAAGAAGAAAAAGAAGAAGAAGAAAGTGGTCAA
AGAACCAGAGACTCAGCGCCCAGTTTTAAACAATGAAGATGACTTTGCTGATGTTTCTCCTATAAGAGCCACATCCTCCT
GTAAGAGTTTGGTCCGCGGGCAGGCACCTGAGATGCCTCTAGTGAAGAAAAAGAAAAAGAAGAAGAGCATCAGCACGCTT
TATGAGGAGCAAGTAGAATCTGAGACCATGCTGCGTGCCAGGCGGACGGAGAAGTCATGCAGCCCCAGGAAGCAGGTACT
TGGCCACTTAGAGTTCGTCAGTAGAGAGAAGAAAAAGAAGAAGTCACCTCTGGCCATGTCCCATGCCTCTGGGCTGAAAA
CCTCCCCAGACCCCAGACAGGGTAAGGAGGAAACCAGATTTGGCAAGAAGCTCAAAAAACACAAGAAGGAAAAAAAGGGG
GCCCAGGACCCCACAGTCCAGGACCCTTGGGTCTGTGAAGCTGGGGATGCTGGGGACACTTGCTCAGTGGGGAAGGAGGG
TGAGGAACAGGCAGCTGTGGGGCAGAAACGGAAGCAGAAGAGCCCCAGGGAACACAGTGAGAAAGTGAAGAAGGAAAAAA
AAGTCCACCAGGAGGGAGAGGCCCTCCCAGGCCACTCTCAGCCCCCCAGGTCCATGGAGAGCAGCCCTAGGAAAGGAAGG
AAAAAGAAGCCAGTCAAAGTTGAGGCTCCGGAATACATCCCCATAGGAGATGGCCCGAAGGCCCCCGTGAAGAAAAAGAT
GAAGTCCAAGAAGAAGGCAGAGCATCCAGTCATCGAGGAGCCAGCTCTGAAAAGGAAGAAAAAGAAGAGCACAGAGAGTG
GGGTAGCAGGAGACCCTGGGAAGGAGGATGCAGACACGGACTTAGAGGTGGTGTTGGAAAAGAAAGGCAACATGGATGAA
GCGCACATAGACCAGGTGAGGCGAAAGGCCTTGCAGGAAGAGATTGATCGAGAGTCAGGCAAAACTGAAGCTTCTGAAAC
CAGGAAGTTGATGGGAACCCAGTTTGGCCAGTGGGATACTGCTAGTTTTGAGAACGAGGAACAGAAACTGAAATTTCTGA
AACTTATGGGTGGCTTCAAAAACCTGTCCACCTCGTTCAGCCGTCCCCCAAGCACCACTGCAAGGCCCAACATGGCCCTC
AGCAAGAAGGCAGCAGACAGCTTGCAGCAGAACCTGCAGCGGGACTATGACCGGGCCATGAGCTGGAAGTACAGCCGAGG
AGCCGGCCTCGGCTTTTCCACCGCCCCCAACAAGATCTTTTACATTGACAGGAATGCCTCCAGGTCAGTCAAGCTGGAAG
ATTAA

Library Parental gene expression (RPM)
SRP051959_spleen 7 .98 RPM
SRP051959_skeletal_muscle 9 .13 RPM
SRP051959_lymph_node 7 .03 RPM
SRP051959_lung 7 .29 RPM
SRP051959_liver 6 .87 RPM
SRP051959_kidney 12 .02 RPM
SRP051959_heart 8 .51 RPM
SRP051959_colon 5 .88 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000018032 ortholog_one2many 2 retrogenes
retro_cfam_1557, retro_cfam_1763,
Homo sapiens ENSG00000103550 ortholog_one2many 3 retrogenes
retro_hsap_3487, retro_hsap_4007, retro_hsap_979,
Gorilla gorilla ENSGGOG00000005673 ortholog_many2many 1 retrogene
retro_ggor_2691,
Macaca mulatta ENSMMUG00000002707 ortholog_many2many 2 retrogenes
retro_mmul_1771, retro_mmul_798,
Nomascus leucogenys ENSNLEG00000012496 ortholog_one2many 2 retrogenes
retro_nleu_1618, retro_nleu_551,
Otolemur garnettii ENSOGAG00000010065 ortholog_many2many 4 retrogenes
retro_ogar_1115, retro_ogar_1480, retro_ogar_1481, retro_ogar_2259,
Pongo abelii ENSPPYG00000007151 ortholog_one2many 3 retrogenes
retro_pabe_3293, retro_pabe_828, retro_pabe_920,
Pan troglodytes ENSPTRG00000007836 ortholog_one2many 3 retrogenes
retro_ptro_2360, retro_ptro_767, retro_ptro_924,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_3199 59.52 81.06
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Download FASTA sequences of all ENSCJAG00000009625 retrocopies