Parental gene:

ENSCJAG00000009473

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:7:62065525..62091722(-)


>ENSCJAG00000009473
ATGTGGAACAGTGGATTCGAAAGCTTTGGCAGCTCCAACTACGGGGGAGCTGGCGGCTACACGCAGTCCCCGGGGGGCTT
TGGATCGCCCGGACCTTCTCAGGCCGAAAAGAAATCAAGAGCCCGAGCCCAGCACATTGTGCCCTGCACTATATCTCAGC
TGCTTTCTGCCACTTTGGTTGATGAAGTGTTCAGAATTGGGAATGTTGAGATTTCACAGGTCACTATTGTGGGGATCATC
AGACATACAGAGAAGGCCCCAACCAACATAGTTTACAAAATAGATGACATGACAGCTCCACCCATGGATGTTCGCCAGTG
GGTTGACACAGATGACGCCAGCAGTGAAAACACTGTGGTTCCTCCAGAAACATATGTGAAAGTGGCAGGCCACCTGAGAT
CTTTTCAGAACAAAAAGAGCCTGGTAGCCTTTAAGATCATGCCCCTGGAGGATATGAATGAGTTCACTGCACATATTCTA
GAAGTGATTAATGCACACATGATATTAAGCAAAGCCAGTGGTCAGCCCTCAGCAGGGAAAGCACCCATCAGCAATCCAGG
AATGAGTGAAGCAGGGAACTTTGGTGGGAATAGCTTTATGCCAGCAAATGGCCTCACTGTGGCCCAAAATCAGGTGCTGA
ATTTGATTAAGGCTTGTCCAAGACCTGAAGGGTTGAACTTTCAAGAGCTCAGGAACCAGCTGAAACACATGTCTGTACCC
TCAATCAAGCAAGCTGTGGATTTTCTGAGCAATGAGGGGCACATCTATTCTACTGTGGATGATGATCATTTTAAATCCAC
AGATGCAGAATAA

Library Parental gene expression (RPM)
SRP051959_spleen 13 .53 RPM
SRP051959_skeletal_muscle 6 .33 RPM
SRP051959_lymph_node 17 .58 RPM
SRP051959_lung 11 .19 RPM
SRP051959_liver 4 .81 RPM
SRP051959_kidney 5 .32 RPM
SRP051959_heart 5 .98 RPM
SRP051959_colon 5 .44 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000006225 ortholog_one2many 5 retrogenes
retro_btau_1093, retro_btau_1228, retro_btau_1359, retro_btau_406, retro_btau_633,
Homo sapiens ENSG00000117748 ortholog_one2many 2 retrogenes
retro_hsap_704, retro_hsap_815,
Gorilla gorilla ENSGGOG00000015287 ortholog_one2many 2 retrogenes
retro_ggor_599, retro_ggor_668,
Loxodonta africana ENSLAFG00000014387 ortholog_one2many 1 retrogene
retro_lafr_519,
Macaca mulatta ENSMMUG00000018172 ortholog_one2many 2 retrogenes
retro_mmul_1081, retro_mmul_2172,
Nomascus leucogenys ENSNLEG00000009702 ortholog_one2many 3 retrogenes
retro_nleu_1409, retro_nleu_250, retro_nleu_2511,
Oryctolagus cuniculus ENSOCUG00000016194 ortholog_many2many 1 retrogene
retro_ocun_1180,
Otolemur garnettii ENSOGAG00000015583 ortholog_one2many 2 retrogenes
retro_ogar_1838, retro_ogar_2066,
Pongo abelii ENSPPYG00000001651 ortholog_one2many 2 retrogenes
retro_pabe_523, retro_pabe_728,
Pan troglodytes ENSPTRG00000000420 ortholog_one2many 1 retrogene
retro_ptro_566,
Pteropus vampyrus ENSPVAG00000001449 ortholog_one2many 1 retrogene
retro_pvam_166,
Ictidomys tridecemlineatus ENSSTOG00000004433 ortholog_one2many 2 retrogenes
retro_itri_1257, retro_itri_773,
Tarsius syrichta ENSTSYG00000010706 possible_ortholog 2 retrogenes
retro_tsyr_1184, retro_tsyr_1806,
Tursiops truncatus ENSTTRG00000007507 ortholog_one2many 1 retrogene
retro_ttru_873,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_225 99.26 100.00
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Download FASTA sequences of all ENSCJAG00000009473 retrocopies