Parental gene:

RNF2, ENSCJAG00000005442

Aliases:None
Description:ring finger protein 2 [Source:HGNC Symbol;Acc:10061]
Organism:Marmoset (Callithrix jacchus)
Coordinates:18:20986402..21038121(-)


>ENSCJAG00000005442
ATGTCTCAGGCTGTGCAGACAAACGGAACTCAACCATTAAGCAAAACATGGGAGCTCAGTTTATATGAATTACAACGAAC
ACCTCAGGAGGCAATAACAGATGGCTTAGAAATTGTGGTTTCACCTCGAAGTCTACACAGTGAATTAATGTGCCCAATTT
GTTTGGATATGCTGAAGAACACCATGACTACAAAGGAGTGTTTGCATCGTTTTTGTGCAGACTGTATCATCACAGCCCTT
AGAAGTGGCAACAAAGAATGCCCTACCTGTCGGAAAAAACTAGTTTCCAAAAGATCACTAAGGCCAGACCCAAACTTTGA
TGCACTCATCAGCAAAATTTATCCAAGTCGTGATGAGTATGAAGCTCATCAAGAGAGAGTATTAGCCAGGATCAACAAGC
ACAATAATCAGCAAGCACTCAGTCACAGCATTGAGGAAGGACTGAAGATACAGGCCATGAACAGACTGCAGCGAGGCAAG
AAACAACAGATTGAAAATGGTAGTGGAGCAGAAGATAATGGTGACAGTTCACACTGTAGTAATGCTTCCACACATAGCAA
TCAGGAAGCAGGCCCTAGTAACAAACGGACCAAAACATCTGATGATTCTGGGCTTGAGCTTGATAATAACAATGCAGCAG
TGGCAATTGATCCAGTAATGGATGGTGCTAGTGAAATTGAATTAGTATTCAGGCCTCACCCCACACTTATGGAAAAAGAT
GACAGTGCACAGACAAGATACATAAAGACTTCAGGTAACGCCACTGTTGATCACTTATCCAAGTATCTGGCTGTGAGGTT
AGCTTTAGAAGAACTTCGAAGCAAAGGTGAATCAAACCAGATGAACCTTGATACAGCCAGTGAGAAGCAGTATACCATTT
ATATAGCAACAGCCAGTGGCCAGTTCACTGTATTGAATGGCTCTTTTTCTTTGGAATTGGTGAGTGAGAAATACTGGAAA
GTGAACAAACCTATGGAACTTTACTACGCACCTACAAAGGAGCACAAATGA

Library Parental gene expression (RPM)
SRP051959_spleen 14 .18 RPM
SRP051959_skeletal_muscle 6 .11 RPM
SRP051959_lymph_node 13 .88 RPM
SRP051959_lung 13 .40 RPM
SRP051959_liver 6 .87 RPM
SRP051959_kidney 14 .13 RPM
SRP051959_heart 15 .30 RPM
SRP051959_colon 7 .06 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000011199 ortholog_one2one 3 retrogenes
retro_chof_1450, retro_chof_2217, retro_chof_2251,
Erinaceus europaeus ENSEEUG00000014091 ortholog_one2one 1 retrogene
retro_eeur_88,
Echinops telfairi ENSETEG00000015824 ortholog_one2one 1 retrogene
retro_etel_2081,
Felis catus ENSFCAG00000009609 ortholog_one2one 1 retrogene
retro_fcat_1725,
Homo sapiens ENSG00000121481 ortholog_one2one 2 retrogenes
retro_hsap_4056, retro_hsap_4226,
Gorilla gorilla ENSGGOG00000014400 ortholog_one2one 1 retrogene
retro_ggor_2724,
Loxodonta africana ENSLAFG00000021357 ortholog_one2many 1 retrogene
retro_lafr_407,
Myotis lucifugus ENSMLUG00000001129 ortholog_one2one 1 retrogene
retro_mluc_2187,
Monodelphis domestica ENSMODG00000007422 ortholog_one2one 1 retrogene
retro_mdom_857,
Nomascus leucogenys ENSNLEG00000018029 ortholog_one2one 2 retrogenes
retro_nleu_1042, retro_nleu_554,
Oryctolagus cuniculus ENSOCUG00000004892 ortholog_one2many 1 retrogene
retro_ocun_838,
Pongo abelii ENSPPYG00000000417 ortholog_one2one 2 retrogenes
retro_pabe_3331, retro_pabe_3374,
Pan troglodytes ENSPTRG00000001775 ortholog_one2one 2 retrogenes
retro_ptro_2749, retro_ptro_2871,
Ictidomys tridecemlineatus ENSSTOG00000006625 ortholog_one2one 3 retrogenes
retro_itri_1646, retro_itri_1794, retro_itri_410,
Tupaia belangeri ENSTBEG00000016387 ortholog_one2one 4 retrogenes
retro_tbel_1757, retro_tbel_3368, retro_tbel_3892, retro_tbel_4061,
Tarsius syrichta ENSTSYG00000006109 ortholog_one2one 6 retrogenes
retro_tsyr_1344, retro_tsyr_1647, retro_tsyr_2063, retro_tsyr_2083, retro_tsyr_227, retro_tsyr_474,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_4198 86.42 95.83
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Download FASTA sequences of all ENSCJAG00000005442 retrocopies