Parental gene:

COPS5, ENSCJAG00000004632

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:16:19380649..19400845(-)


>ENSCJAG00000004632
ATGGCGGCGTCCGGGAGCGGTATGGCCCAGAAAACCTGGGAATTGGCCAACAACATGCAGGAAGCTCAGAGTATCGATGA
AATCTACAAATACGACAAGAAGCAGCAGCAAGAAATCCTGGCGGCGAAGCCCTGGACTAAGGATCACCATTACTTTAAGT
ACTGCAAAATCTCAGCATTGGCTCTACTGAAGATGGTGATGCACGCCAGATCAGGAGGCAACTTAGAAGTGATGGGTCTG
ATGCTAGGAAAGGTGGATGGTGAAACCATGATCATTATGGACAGTTTTGCTTTGCCTGTGGAGGGCACTGAAACCCGAGT
AAATGCACAGGCTGCTGCATATGAGTACATGGCCGCATATATAGAAAATGCTAAACAGGTTGGTCGCCTTGAAAATGCAA
TTGGGTGGTATCATAGCCACCCTGGCTATGGCTGCTGGCTTTCTGGGATTGATGTTAGTACTCAGATGCTCAATCAGCAG
TTCCAGGAACCATTTGTAGCAGTGGTGATTGATCCAACAAGAACGATATCTGCAGGGAAAGTGAATCTTGGCGCCTTTAG
GACATACCCAAAGGGCTACAAACCTCCTGATGAAGGACCTTCTGAGTACCAGACTATCCCACTTAATAAAATAGAAGACT
TTGGTGTACACTGCAAACAATATTATGCCTTAGAGGTCTCATATTTCAAATCCTCTTTGGATCGAAAATTGCTCGAGCTG
TTGTGGAATAAATACTGGGTGAATACATTGAGTTCCTCTAGCTTGCTTACTAATGCAGACTATACCACTGGTCAGGTATT
CGATTTGTCTGAAAAGTTAGAGCAGTCAGAAGCCCAGCTGGGACGAGGGAGTTTCATGTTGGGTTTAGAAACGCATGACC
GAAAATCAGAAGACAAACTTGCCAAAGCTACGAGAGACAGCTGTAAAACTACCATAGAAGCTATCCATGGATTGATGTCT
CAGGTTATTAAGGATAAACTGTTTAATCAAATTAACATCTCTTAA

Library Parental gene expression (RPM)
SRP051959_spleen 11 .13 RPM
SRP051959_skeletal_muscle 25 .73 RPM
SRP051959_lymph_node 10 .94 RPM
SRP051959_lung 11 .18 RPM
SRP051959_liver 16 .59 RPM
SRP051959_kidney 14 .40 RPM
SRP051959_heart 14 .10 RPM
SRP051959_colon 10 .41 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000002028 possible_ortholog 1 retrogene
retro_chof_556,
Homo sapiens ENSG00000121022 ortholog_one2many 1 retrogene
retro_hsap_3634,
Gorilla gorilla ENSGGOG00000016289 possible_ortholog 1 retrogene
retro_ggor_2451,
Microcebus murinus ENSMICG00000011042 ortholog_one2many 1 retrogene
retro_mmur_834,
Myotis lucifugus ENSMLUG00000011697 possible_ortholog 1 retrogene
retro_mluc_1528,
Monodelphis domestica ENSMODG00000007838 ortholog_one2many 1 retrogene
retro_mdom_1460,
Mustela putorius furo ENSMPUG00000010175 possible_ortholog 1 retrogene
retro_mputfur_397,
Nomascus leucogenys ENSNLEG00000010914 ortholog_one2many 1 retrogene
retro_nleu_815,
Pongo abelii ENSPPYG00000018648 ortholog_one2many 1 retrogene
retro_pabe_2980,
Pan troglodytes ENSPTRG00000020317 ortholog_one2many 2 retrogenes
retro_ptro_2457, retro_ptro_638,
Tupaia belangeri ENSTBEG00000008440 possible_ortholog 7 retrogenes
retro_tbel_1083, retro_tbel_1833, retro_tbel_1853, retro_tbel_2528, retro_tbel_3147, retro_tbel_3896, retro_tbel_3914,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2454 76.89 62.87
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Download FASTA sequences of all ENSCJAG00000004632 retrocopies