Parental gene: | COPS2, ENSCJAG00000001585 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 10:26328851..26364112(-) |
>ENSCJAG00000001585
ATGTCTGACATGGAGGATGATTTCATGTGCGATGATGAGGAGGACTACGACCTGGAATACTCTGAAGATAGTAACTCTGA
GCCAAATGTGGATTTGGAAAATCAGTACTATAATTCCAAAGCATTAAAAGAAGATGACCCAAAAGCAGCATTAAGCAGTT
TCCAAAAGGTTTTGGAACTTGAAGGTGAAAAAGGAGAATGGGGATTTAAAGCACTGAAACAAATGATTAAGATTAACTTC
AAGTTGACAAACTTTCCAGAAATGATGAATAGATATAAACAACTATTGACCTATATTCGGAGTGCTGTCACAAGAAATTA
TTCTGAAAAATCCATTAATTCTATTCTTGATTATATCTCTACTTCTAAACAGAATTCTGATTTTTTATGTCAGATGGATT
TACTGCAGGAATTCTATGAAACAACTCTGGAAGCTTTGAAAGATGCTAAGAATGATAGACTGTGGTTTAAGACAAACACA
AAGCTTGGAAAATTATATTTAGAACGAGAGGAGTATGGAAAGCTTCAAAAAATTTTACGCCAGTTACATCAGTCCTGCCA
GACTGATGATGGAGAAGATGATCTGAAAAAGGGTACACAGTTATTAGAAATATATGCTTTGGAAATTCAAATGTACACAG
CACAGAAAAATAACAAAAAACTTAAAGCACTCTATGAACAGTCACTTCACATCAAGTCTGCCATCCCTCATCCACTGATC
ATGGGAGTTATCAGAGAATGTGGTGGTAAAATGCACTTGAGAGAAGGTGAATTTGAAAAGGCACACACTGATTTTTTTGA
AGCCTTCAAGAATTATGATGAATCTGGAAGTCCGAGACGAACTACTTGCTTAAAATATTTGGTCTTAGCAAATATGCTTA
TGAAATCAGGAATAAATCCATTTGACTCACAGGAGGCCAAGCCGTACAAAAATGATCCAGAAATTTTAGCAATGACGAAT
TTAGTAAGTGCCTATCAGAATAATGACATCACTGAATTTGAAAAGATTCTAAAAACAAATCACAGCAACATCATGGATGA
TCCTTTCATAAGAGAACACATTGAAGAGCTTTTGCGAAACATCAGAACACAAGTGCTTATAAAATTAATTAAGCCTTACA
CAAGAATACATATTCCTTTTATTTCTAAGGAATTAAACATAGATGTAGCTGATGTGGAGAGCTTGCTGGTGCAGTGCATA
TTGGATAACACTATTCATGGCCGAATTGATCAAGTCAACCAGCTCCTTGAACTGGATCATCAGAAGAGGGGTGGTGCACG
ATATACTGCACTAGATAAATGGACCAACCAACTAAATTCTCTCAACCAGGCTGTAGTCAGTAAACTGGCTTAA
ATGTCTGACATGGAGGATGATTTCATGTGCGATGATGAGGAGGACTACGACCTGGAATACTCTGAAGATAGTAACTCTGA
GCCAAATGTGGATTTGGAAAATCAGTACTATAATTCCAAAGCATTAAAAGAAGATGACCCAAAAGCAGCATTAAGCAGTT
TCCAAAAGGTTTTGGAACTTGAAGGTGAAAAAGGAGAATGGGGATTTAAAGCACTGAAACAAATGATTAAGATTAACTTC
AAGTTGACAAACTTTCCAGAAATGATGAATAGATATAAACAACTATTGACCTATATTCGGAGTGCTGTCACAAGAAATTA
TTCTGAAAAATCCATTAATTCTATTCTTGATTATATCTCTACTTCTAAACAGAATTCTGATTTTTTATGTCAGATGGATT
TACTGCAGGAATTCTATGAAACAACTCTGGAAGCTTTGAAAGATGCTAAGAATGATAGACTGTGGTTTAAGACAAACACA
AAGCTTGGAAAATTATATTTAGAACGAGAGGAGTATGGAAAGCTTCAAAAAATTTTACGCCAGTTACATCAGTCCTGCCA
GACTGATGATGGAGAAGATGATCTGAAAAAGGGTACACAGTTATTAGAAATATATGCTTTGGAAATTCAAATGTACACAG
CACAGAAAAATAACAAAAAACTTAAAGCACTCTATGAACAGTCACTTCACATCAAGTCTGCCATCCCTCATCCACTGATC
ATGGGAGTTATCAGAGAATGTGGTGGTAAAATGCACTTGAGAGAAGGTGAATTTGAAAAGGCACACACTGATTTTTTTGA
AGCCTTCAAGAATTATGATGAATCTGGAAGTCCGAGACGAACTACTTGCTTAAAATATTTGGTCTTAGCAAATATGCTTA
TGAAATCAGGAATAAATCCATTTGACTCACAGGAGGCCAAGCCGTACAAAAATGATCCAGAAATTTTAGCAATGACGAAT
TTAGTAAGTGCCTATCAGAATAATGACATCACTGAATTTGAAAAGATTCTAAAAACAAATCACAGCAACATCATGGATGA
TCCTTTCATAAGAGAACACATTGAAGAGCTTTTGCGAAACATCAGAACACAAGTGCTTATAAAATTAATTAAGCCTTACA
CAAGAATACATATTCCTTTTATTTCTAAGGAATTAAACATAGATGTAGCTGATGTGGAGAGCTTGCTGGTGCAGTGCATA
TTGGATAACACTATTCATGGCCGAATTGATCAAGTCAACCAGCTCCTTGAACTGGATCATCAGAAGAGGGGTGGTGCACG
ATATACTGCACTAGATAAATGGACCAACCAACTAAATTCTCTCAACCAGGCTGTAGTCAGTAAACTGGCTTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 34 .10 RPM |
| SRP051959_skeletal_muscle | 42 .15 RPM |
| SRP051959_lymph_node | 28 .90 RPM |
| SRP051959_lung | 33 .67 RPM |
| SRP051959_liver | 28 .61 RPM |
| SRP051959_kidney | 33 .39 RPM |
| SRP051959_heart | 38 .33 RPM |
| SRP051959_colon | 24 .52 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000013425 | ortholog_one2one | 1 retrogene | |
| Choloepus hoffmanni | ENSCHOG00000013375 | ortholog_one2one | 7 retrogenes | |
| Callithrix jacchus | ENSCJAG00000014450 | within_species_paralog | 1 retrogene | |
| Echinops telfairi | ENSETEG00000019523 | ortholog_one2one | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000009838 | ortholog_one2many | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000002466 | ortholog_one2one | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000006455 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000013284 | ortholog_one2one | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000008306 | ortholog_one2one | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000000462 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_3105 | 94.28 | 96.31 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_3117 | 93.19 | 96.04 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000001585 retrocopies