Parental gene: | PAIP1, ENSCJAG00000001340 |
| Aliases: | None |
| Description: | poly(A) binding protein interacting protein 1 [Source:HGNC Symbol;Acc:16945] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 2:159831941..159862941(+) |
>ENSCJAG00000001340
ATGGCTAAACCCCAGGTGGTTGTAGCACCTGTATTAATGTCTAAGCTGTCTGTGAATGCCCCTGAATTTTATCCGTCAGG
TTATTCTTCCAATTACACAGAATCCTATGAGGATGGTTGTGAGGATTATCCCACTCTATCTGAATATGTTCAGGATTTTT
TGAATCATCTTACAGAGCAGCCTGGCAGTTTTGAAACTGAAATCGAACAGTTTGCGGAGACCCTGAATGGTTGGGTTACA
ACAGATGATGCTTTGCAAGAACTTGTGGAACTCATATATCAACAGGCCACATCTATCCCGAATTTCTCTTATATGGGAGC
TCGCCTGTGTAATTACCTGTCACATCATCTGACAATTAGCCCACAGAGTGGCAACTTCCGCCAATTGCTACTTCAAAGAT
GTCGGACTGAATATGAAGTTAAAGATCAAGCTGCAAAAGGGGATGAAGTTACTCGAAAACGATTTCATGCATTTGTACTC
TTTCTGGGAGAGCTTTATCTTAACCTGGAGATCAAGGGAACAAATGGACAGGTTACGAGAGCAGATATTCTTCAAGTTGG
TCTTCGAGAGCTGCTGAATGCCCTCTTTTCTAATCCTATGGATGACAATTTAATTTGTGCAGTAAAATTATTGAAGTTGA
CAGGATCAGTTTTGGAAGATGCTTGGAAGGAAAAAGGAAAGATGGATATGGAAGAAATTATTCAGAGAATTGAAAATGTT
GTCCTAGATGCAAACTGCAGTAGAGATGTAAAACAGATGCTCTTGAAGCTTGTGGAACTCCGGTCAAGTAACTGGGGTAG
AGTCCATGCAACTTCAACATACAGAGAAGCAACACCAGAAAATGATCCTAACTACTTTATGAATGAACCAACATTTTATA
CGTCTGATGGTGTTCCTTTCACTGCAGCTGATCCAGATTATCAAGAGAAATATCAAGAGTTACTTGAAAGAGAGGACTTT
TTTCCAGATTATGAAGAAAATGGAACAGATTTATCAGGGGCTGGTGATCCATACTTGGATGATATTGATGATGAGATGGA
CCCAGAGATAGAAGAAGCTTATGAAAAGTTTTGTTTGGAATCAGAGCGTAAGCGAAAACAGTAA
ATGGCTAAACCCCAGGTGGTTGTAGCACCTGTATTAATGTCTAAGCTGTCTGTGAATGCCCCTGAATTTTATCCGTCAGG
TTATTCTTCCAATTACACAGAATCCTATGAGGATGGTTGTGAGGATTATCCCACTCTATCTGAATATGTTCAGGATTTTT
TGAATCATCTTACAGAGCAGCCTGGCAGTTTTGAAACTGAAATCGAACAGTTTGCGGAGACCCTGAATGGTTGGGTTACA
ACAGATGATGCTTTGCAAGAACTTGTGGAACTCATATATCAACAGGCCACATCTATCCCGAATTTCTCTTATATGGGAGC
TCGCCTGTGTAATTACCTGTCACATCATCTGACAATTAGCCCACAGAGTGGCAACTTCCGCCAATTGCTACTTCAAAGAT
GTCGGACTGAATATGAAGTTAAAGATCAAGCTGCAAAAGGGGATGAAGTTACTCGAAAACGATTTCATGCATTTGTACTC
TTTCTGGGAGAGCTTTATCTTAACCTGGAGATCAAGGGAACAAATGGACAGGTTACGAGAGCAGATATTCTTCAAGTTGG
TCTTCGAGAGCTGCTGAATGCCCTCTTTTCTAATCCTATGGATGACAATTTAATTTGTGCAGTAAAATTATTGAAGTTGA
CAGGATCAGTTTTGGAAGATGCTTGGAAGGAAAAAGGAAAGATGGATATGGAAGAAATTATTCAGAGAATTGAAAATGTT
GTCCTAGATGCAAACTGCAGTAGAGATGTAAAACAGATGCTCTTGAAGCTTGTGGAACTCCGGTCAAGTAACTGGGGTAG
AGTCCATGCAACTTCAACATACAGAGAAGCAACACCAGAAAATGATCCTAACTACTTTATGAATGAACCAACATTTTATA
CGTCTGATGGTGTTCCTTTCACTGCAGCTGATCCAGATTATCAAGAGAAATATCAAGAGTTACTTGAAAGAGAGGACTTT
TTTCCAGATTATGAAGAAAATGGAACAGATTTATCAGGGGCTGGTGATCCATACTTGGATGATATTGATGATGAGATGGA
CCCAGAGATAGAAGAAGCTTATGAAAAGTTTTGTTTGGAATCAGAGCGTAAGCGAAAACAGTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 35 .50 RPM |
| SRP051959_skeletal_muscle | 34 .70 RPM |
| SRP051959_lymph_node | 29 .34 RPM |
| SRP051959_lung | 30 .70 RPM |
| SRP051959_liver | 26 .01 RPM |
| SRP051959_kidney | 44 .99 RPM |
| SRP051959_heart | 38 .71 RPM |
| SRP051959_colon | 30 .11 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000020376 | ortholog_one2one | 1 retrogene | |
| Choloepus hoffmanni | ENSCHOG00000004961 | ortholog_one2one | 1 retrogene | |
| Erinaceus europaeus | ENSEEUG00000009651 | possible_ortholog | 1 retrogene | |
| Homo sapiens | ENSG00000172239 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000001887 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_3224 | 90.79 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_3337 | 92.37 | 99.73 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000001340 retrocopies