Parental gene: | RBPJ, ENSCHOG00000001582 |
| Aliases: | None |
| Description: | recombination signal binding protein for immunoglobulin kappa J region [Source:HGNC Symbol;Acc:5724] |
| Organism: | Sloth (Choloepus hoffmanni) |
| Coordinates: | GeneScaffold_6050:442..39295(+) |
>ENSCHOG00000001582
AAACTTGGTGAGCGGCCTCAACCTAAACGACTCACTAGGGAAGCTATGCGAAATTATTTAAAAGAGCGAGGGGATCAAAC
AGTACTTATTCTTCATGCAAAAGTTGCACAGAAGTCATATGGAAATGAAAAAAGGTTTTTTTGTCCTCCTCCTTGTGTAT
ATCTTATGGGCAGTGGATGGAAGAAAAAAAAAGAACAAATGGAACGCGATGGTTGTTCTGAACAAGAATCTCAACCATGT
GCATTTATTGGAATAGGAAATAGTGACCAAGAAATGCAGCAGCTGAACTTAGAAGGAAAGAACTATTGCACAGCCAAAAC
ATTGTACATATCTGATTCAGACAAGAGAAAGCACTTCATGTTGTCTGTAAAGATGTTCTATGGTAACAGTGATGACATTG
GTGTGTTCCTCAGCAAGCGGATAAAAGTCATCTCCAAACCTTCCAAAAAGAAGCAGTCATTGAAAAACGCTGACTTGTGC
ATTGCATCAGGAACAAAGGTGGCTCTGTTTAATCGACTTAGATCTCAGACAGTTAGTACCAGATACTTGCACGTAGAAGG
AGGTAATTTCCATGCCAGTTCACAGCAGTGGGGAGCATTTTACATCCATCTCTTGGATGATGATGAATCAGAAGGAGAAG
AATTCACAGTACGCGATGGCTACATCCATTATGGACAAACAGTCAAACTTGTGTGTTCAGTTACTGGCATGGCACTCCCA
AGATTGTCACAACTCCATAAATGTGCATTTTACCTTAAGGATACAGAAAGAATGTATTTGTGCCTTTCTCAAGAAAGAAT
AATCCAGTTTCAGGCCACTCCATGCCCAAAAGAACCAAATAAAGAGATGATAAATGATGGCGCTTCCTGGACAATCATTA
GTACAGATAAGGCAGAGTATACATTTTACGAGGGAATGGGTCCTGTCCTTGCCCCTGTCACACCTGTGCCTGTCGTCGAA
AGTCTTCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGACATTTCTGCACTCC
GAGAAGGTTGGAGATGGGTCCGGCAGCCAGTCCAAGTTCCAGTAACTTTGGTCCATAATGATGGAATCATTTATTCCACC
AGTCTTACCTTTACCTACACACCAGAACCAGGGCCGCGATCACACTGCTGTGTAGCCAGAGCAATCCTTCGAGCCAGTTC
AAGCCAAGTGTCCCCACATGAATCAAACACAGACAGCAAGGGAAGTTACACAAATGTCAGCACAAATTCAACCAGTGTCA
CATCATCTACAGCAACAGTGGTGTCCTAA
AAACTTGGTGAGCGGCCTCAACCTAAACGACTCACTAGGGAAGCTATGCGAAATTATTTAAAAGAGCGAGGGGATCAAAC
AGTACTTATTCTTCATGCAAAAGTTGCACAGAAGTCATATGGAAATGAAAAAAGGTTTTTTTGTCCTCCTCCTTGTGTAT
ATCTTATGGGCAGTGGATGGAAGAAAAAAAAAGAACAAATGGAACGCGATGGTTGTTCTGAACAAGAATCTCAACCATGT
GCATTTATTGGAATAGGAAATAGTGACCAAGAAATGCAGCAGCTGAACTTAGAAGGAAAGAACTATTGCACAGCCAAAAC
ATTGTACATATCTGATTCAGACAAGAGAAAGCACTTCATGTTGTCTGTAAAGATGTTCTATGGTAACAGTGATGACATTG
GTGTGTTCCTCAGCAAGCGGATAAAAGTCATCTCCAAACCTTCCAAAAAGAAGCAGTCATTGAAAAACGCTGACTTGTGC
ATTGCATCAGGAACAAAGGTGGCTCTGTTTAATCGACTTAGATCTCAGACAGTTAGTACCAGATACTTGCACGTAGAAGG
AGGTAATTTCCATGCCAGTTCACAGCAGTGGGGAGCATTTTACATCCATCTCTTGGATGATGATGAATCAGAAGGAGAAG
AATTCACAGTACGCGATGGCTACATCCATTATGGACAAACAGTCAAACTTGTGTGTTCAGTTACTGGCATGGCACTCCCA
AGATTGTCACAACTCCATAAATGTGCATTTTACCTTAAGGATACAGAAAGAATGTATTTGTGCCTTTCTCAAGAAAGAAT
AATCCAGTTTCAGGCCACTCCATGCCCAAAAGAACCAAATAAAGAGATGATAAATGATGGCGCTTCCTGGACAATCATTA
GTACAGATAAGGCAGAGTATACATTTTACGAGGGAATGGGTCCTGTCCTTGCCCCTGTCACACCTGTGCCTGTCGTCGAA
AGTCTTCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGACATTTCTGCACTCC
GAGAAGGTTGGAGATGGGTCCGGCAGCCAGTCCAAGTTCCAGTAACTTTGGTCCATAATGATGGAATCATTTATTCCACC
AGTCTTACCTTTACCTACACACCAGAACCAGGGCCGCGATCACACTGCTGTGTAGCCAGAGCAATCCTTCGAGCCAGTTC
AAGCCAAGTGTCCCCACATGAATCAAACACAGACAGCAAGGGAAGTTACACAAATGTCAGCACAAATTCAACCAGTGTCA
CATCATCTACAGCAACAGTGGTGTCCTAA
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000003602 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000168214 | ortholog_one2one | 6 retrogenes | |
| Gorilla gorilla | ENSGGOG00000004582 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000039191 | ortholog_one2one | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000016895 | ortholog_one2one | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000013449 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000015968 | ortholog_one2one | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000009022 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_chof_371 | 83.40 | 52.38 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_chof_1172 | 98.76 | 52.38 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_chof_1278 | 85.95 | 51.52 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_chof_2449 | 79.51 | 52.38 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCHOG00000001582 retrocopies