Parental gene:

ZDHHC6, ENSCAFG00000010960

Aliases:None
Description:zinc finger, DHHC-type containing 6 [Source:HGNC Symbol;Acc:19160]
Organism:Dog (Canis familiaris)
Coordinates:28:23479975..23494977(-)


>ENSCAFG00000010960
ATGGATACATTCTGCTCAGTTATCAAGTTTGAAAATCTCCAAGAACTAAAGAGACTGTGTCACTGGGGTCCCATCATAGC
CCTCGGTGTTATAGCAATATGTTCCACAATGGCCATGATTGACTCTGTGTTGTGGTATTGGCCTTTACATACAACTGGAG
GAAGCGTGAATTTCATTATGTTGATAAACTGGACTGTCATGATTCTTTATAACTACTTCAATGCCATGTTTATTGGTCCT
GGCTTTGTCCCTTTGGGGTGGAAACCGGAAAATTCTCAGGATAGCATGTACCTCCAGTATTGTAAAGTCTGCCAAGCATA
CAAGGCACCACGGTCACATCACTGCAGAAAGTGTAACAGATGTGTGATGAAGATGGACCATCACTGTCCTTGGATCAACA
ACTGTTGTGGTTACCAAAATCATGCTTCGTTCACACTGTTTCTCCTTTTAGCACCACTGGGTTGTATTCATGCTGCCTTC
ATTTTTGTTATGACTATGTATACACAGCTTTATAATCGGCTCTCCTTTGGGTGGAACACGGTAAAGATTGATATGAGTGC
AGCCCGGAGAGATCCCCTTCCAATTATTCCCTTTGGATTAGCAGCATTTGCGGCCACCTTGTTTGCCTTGGGATTAGCTT
TAGGAACAACCATAGCTGTTGGGATGTTGTTTTTTATCCAGATGAAAATAATTCTCAGAAACAAAACTTCTATTGAATCA
TGGATTGAAGAAAAGGCTAAGGATCGAATTCAATATTACCAACTAGATGAAGTCTTTGTTTTTCCCTATGATATGGGAAG
TCGATGGAAGAACTTTAAACAGGTATTCACATGGTCAGGGGTCCCTGAAGGAGATGGACTAGCATGGCCAGTAAGAGAAG
ACTGTCACCAGTACAGCTTAACAATTGAACAGTTGAAACAAAAAGCAGATAAAAGAATCAGAAGTGTGCGGTATAGAGTA
ATAGAGGATTACAGTGGTGCCTGCTGTCCTTTGAATAAAGGAATCAAAACGTTCTTCACCAGCCCCTGCACTGAGGAGCC
TCGAATAAGGCTACAGAAAGGGGAATTCATTTTAGCCACAAGAGGGTTACGATACTGGTTGTATGGAGATAAAATTCTTG
ATGATGCCTCTGTAGAAGGTGTCTCACGAATCAGAGGCTGGTTCCCTAGAAACTGTGTGGAGAAGTGTCCCTGTGATGCT
GAAACAGATCAAGCCCCAGAGGGCGAGAAGAAAAATAGATAG

Library Parental gene expression (RPM)
SRP017611_brain 17 .15 RPM
SRP017611_kidney 36 .19 RPM
SRP017611_liver 9 .86 RPM
SRP012049_cerebellum 26 .04 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000015401 ortholog_one2one 1 retrogene
retro_amel_1120,
Choloepus hoffmanni ENSCHOG00000012828 ortholog_one2one 1 retrogene
retro_chof_1480,
Felis catus ENSFCAG00000030784 ortholog_one2one 1 retrogene
retro_fcat_1193,
Loxodonta africana ENSLAFG00000008129 ortholog_one2one 1 retrogene
retro_lafr_304,
Mustela putorius furo ENSMPUG00000002043 ortholog_one2one 1 retrogene
retro_mputfur_668,
Mus musculus ENSMUSG00000024982 ortholog_one2one 1 retrogene
retro_mmus_1740,
Otolemur garnettii ENSOGAG00000030535 ortholog_one2one 1 retrogene
retro_ogar_1652,
Ictidomys tridecemlineatus ENSSTOG00000013840 ortholog_one2one 1 retrogene
retro_itri_308,
Tarsius syrichta ENSTSYG00000009673 ortholog_one2one 2 retrogenes
retro_tsyr_1653, retro_tsyr_1771,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_2178 89.80 57.63
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Download FASTA sequences of all ENSCAFG00000010960 retrocopies