Parental gene:

EAF1, ENSCAFG00000006017

Aliases:None
Description:ELL associated factor 1 [Source:HGNC Symbol;Acc:20907]
Organism:Dog (Canis familiaris)
Coordinates:23:27192300..27203558(-)


>ENSCAFG00000006017
ATGAACGGGACCGCGAACCCGCTGCTGGACCGCGAGGAGCACTGCCTGCGGCTCGGGGAGAGCTTCGAGAAGCGGCCGCG
GGCCTCTTTCCACACCATTCGCTATGACTTTAAGCCAGCATCTATAGATACTTCATGCGAAGGAGAGCTTCAGGTTGGCA
AAGGAGATGAAGTCACAATTACACTGCCACATATCCCTGGATCCACACCACCAATGACTGTGTTCAAGGGGAACAAACGG
CCCTATCAGAAAGACTGTGTGCTTATTATTAATCATGACACTGGTGAATATGTGCTGGAAAAACTCAGTAGCAGCATTCA
GGTCAAGAAAACAAGAGCCGAGGGGAGCAGTAAAATCCAAGCCCGAATGGAACAGCAGCCCACTCGTCCCCCACAGCCAT
CACAGCCACCACCACCTCCACCACCTATGCCATTCAGAGCTCCAACAAAGCCTCCAGTTGGACCCAAAACTTCCCCCTTG
AAAGATAACCCCTCACCTGAACCCCAGCTGGATGACATCAAAAGAGAGCTGAGGGCCGAAGTTGACATTATTGAACAGAT
GAGCAGCAGCAGTGGGAGCAGTTCCTCAGACTCTGAGAGCTCATCAGGAAGTGATGATGACAGCTCGAGCAGCGGGGGTG
AGGACAATGGCCCAGCGTCCCCTCCGCTGCCCGCACACCAGCAGCCCTACAACAGCAGGCCGGCCGTAGCCAACGGAACC
AGCCGGCCGCAAGGAAGCAACCAGCTCATGAACACACTCAGAAATGACTTGCAGTTGAGTGAGTCTGGCAGTGACAGTGA
TGACTAG

Library Parental gene expression (RPM)
SRP017611_brain 12 .23 RPM
SRP017611_kidney 18 .82 RPM
SRP017611_liver 5 .66 RPM
SRP012049_cerebellum 17 .51 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000007449 ortholog_one2one 4 retrogenes
retro_chof_1039, retro_chof_2342, retro_chof_355, retro_chof_883,
Erinaceus europaeus ENSEEUG00000002084 ortholog_one2one 1 retrogene
retro_eeur_254,
Monodelphis domestica ENSMODG00000014543 ortholog_one2many 1 retrogene
retro_mdom_290,
Otolemur garnettii ENSOGAG00000013964 ortholog_one2one 1 retrogene
retro_ogar_2142,
Sarcophilus harrisii ENSSHAG00000006597 ortholog_one2many 2 retrogenes
retro_shar_485, retro_shar_56,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_1658 85.06 63.81
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Download FASTA sequences of all ENSCAFG00000006017 retrocopies