Parental gene: | VIM, ENSCAFG00000004529 |
| Aliases: | None |
| Description: | vimentin [Source:HGNC Symbol;Acc:12692] |
| Organism: | Dog (Canis familiaris) |
| Coordinates: | 2:19670544..19679493(-) |
>ENSCAFG00000004529
ATGTCCACCAGGTCTGTGTCCTCGTCCTCCTACCGCAGGATGTTCGGCGGCCCGGGCACCGGGAGCCGGCCGAGCTCCAC
GCGGAGCTACGTGACCACGTCCACCCGCACCTACAGCCTGGGCAGCGCGCTGCGCCCCAGCACCAGCCGCAGCCTCTACG
CCTCGTCCCCGGGCGGCGCGTACGCCACGCGCTCCTCCGCGGTGCGCCTGCGGAGCAGTGTGCCCGGCGTGCGTCTGCTG
CAGGACTCGGTGGACTTCTCGCTGGCCGACGCCATCAACACCGAGTTCAAGAACACGCGCACCAACGAGAAGGTGGAGCT
GCAGGAGCTGAACGACCGCTTCGCCAACTACATCGACAAGGTGCGCTTCCTGGAGCAGCAGAACAAGATCCTGCTGGCCG
AGCTCGAGCAGCTCAAGGGCCAGGGCAAGTCGCGCCTGGGGGACCTCTACGAGGAGGAGATGCGGGAGCTGCGCCGGCAG
GTGGACCAGCTCACCAACGACAAGGCCCGCGTCGAGGTGGAGCGCGACAACCTGGCCGAGGACATCATGCGGCTGCGGGA
GAAGTTGCAAGAGGAGATGCTTCAGAGAGAGGAAGCCGAGAGCACCCTGCAGTCTTTCCGACAGGATGTTGACAATGCTT
CTTTGGCACGTCTTGACCTTGAGCGGAAAGTGGAATCCTTGCAAGAAGAGATTGCCTTTTTGAAGAAACTACATGATGAG
GAAATCCAGGAGCTGCAGGCCCAGATTCAGGACCAGCATGTCCAAATCGATATGGATGTTTCCAAGCCTGACCTCACGGC
TGCCCTGCGTGATGTACGCCAGCAATATGAAAGCGTGGCTGCCAAGAACCTTCAGGAGGCCGAGGAATGGTACAAGTCCA
AGTTTGCCGACCTCTCTGAGGCTGCTAACCGGAACAATGATGCCCTGCGCCAGGCGAAGCAGGAGTCAAATGAGTACCGG
AGACAGGTGCAGTCCCTCACCTGCGAAGTGGATGCACTCAAAGGGACTAATGAGTCTCTGGAACGCCAGATGCGTGAAAT
GGAAGAGAACTTTGCCGTCGAAGCTGCTAACTACCAAGACACTATTGGCCGCCTGCAGGATGAGATTCAGAACATGAAGG
AAGAAATGGCTCGTCACCTTCGGGAGTACCAGGACCTGCTGAATGTTAAGATGGCTCTCGACATTGAGATTGCCACCTAC
AGGAAGCTGCTGGAAGGCGAGGAGAGCAGGATTGCTCTGCCTCTTCCAAACTTTTCTTCCCTGAACCTGAGGGAAACCAA
CCTGGATTCACTCCCTCTGGTTGACACTCACTCAAAAAGAACGCTTCTGATTAAGACGGTTGAAACTAGGGATGGACAGG
TTATCAACGAAACTTCTCAGCATCATGATGACCTTGAGTGA
ATGTCCACCAGGTCTGTGTCCTCGTCCTCCTACCGCAGGATGTTCGGCGGCCCGGGCACCGGGAGCCGGCCGAGCTCCAC
GCGGAGCTACGTGACCACGTCCACCCGCACCTACAGCCTGGGCAGCGCGCTGCGCCCCAGCACCAGCCGCAGCCTCTACG
CCTCGTCCCCGGGCGGCGCGTACGCCACGCGCTCCTCCGCGGTGCGCCTGCGGAGCAGTGTGCCCGGCGTGCGTCTGCTG
CAGGACTCGGTGGACTTCTCGCTGGCCGACGCCATCAACACCGAGTTCAAGAACACGCGCACCAACGAGAAGGTGGAGCT
GCAGGAGCTGAACGACCGCTTCGCCAACTACATCGACAAGGTGCGCTTCCTGGAGCAGCAGAACAAGATCCTGCTGGCCG
AGCTCGAGCAGCTCAAGGGCCAGGGCAAGTCGCGCCTGGGGGACCTCTACGAGGAGGAGATGCGGGAGCTGCGCCGGCAG
GTGGACCAGCTCACCAACGACAAGGCCCGCGTCGAGGTGGAGCGCGACAACCTGGCCGAGGACATCATGCGGCTGCGGGA
GAAGTTGCAAGAGGAGATGCTTCAGAGAGAGGAAGCCGAGAGCACCCTGCAGTCTTTCCGACAGGATGTTGACAATGCTT
CTTTGGCACGTCTTGACCTTGAGCGGAAAGTGGAATCCTTGCAAGAAGAGATTGCCTTTTTGAAGAAACTACATGATGAG
GAAATCCAGGAGCTGCAGGCCCAGATTCAGGACCAGCATGTCCAAATCGATATGGATGTTTCCAAGCCTGACCTCACGGC
TGCCCTGCGTGATGTACGCCAGCAATATGAAAGCGTGGCTGCCAAGAACCTTCAGGAGGCCGAGGAATGGTACAAGTCCA
AGTTTGCCGACCTCTCTGAGGCTGCTAACCGGAACAATGATGCCCTGCGCCAGGCGAAGCAGGAGTCAAATGAGTACCGG
AGACAGGTGCAGTCCCTCACCTGCGAAGTGGATGCACTCAAAGGGACTAATGAGTCTCTGGAACGCCAGATGCGTGAAAT
GGAAGAGAACTTTGCCGTCGAAGCTGCTAACTACCAAGACACTATTGGCCGCCTGCAGGATGAGATTCAGAACATGAAGG
AAGAAATGGCTCGTCACCTTCGGGAGTACCAGGACCTGCTGAATGTTAAGATGGCTCTCGACATTGAGATTGCCACCTAC
AGGAAGCTGCTGGAAGGCGAGGAGAGCAGGATTGCTCTGCCTCTTCCAAACTTTTCTTCCCTGAACCTGAGGGAAACCAA
CCTGGATTCACTCCCTCTGGTTGACACTCACTCAAAAAGAACGCTTCTGATTAAGACGGTTGAAACTAGGGATGGACAGG
TTATCAACGAAACTTCTCAGCATCATGATGACCTTGAGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 84 .31 RPM |
| SRP017611_kidney | 172 .09 RPM |
| SRP017611_liver | 104 .42 RPM |
| SRP012049_cerebellum | 192 .48 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Dasypus novemcinctus | ENSDNOG00000011305 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cfam_1902 | 75.42 | 50.21 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cfam_2022 | 82.64 | 56.22 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCAFG00000004529 retrocopies