Parental gene:

PPT1, ENSCAFG00000003004

Aliases:None
Description:Canis lupus familiaris palmitoyl-protein thioesterase 1 (PPT1), mRNA. [Source:RefSeq mRNA;Acc:NM_001010944]
Organism:Dog (Canis familiaris)
Coordinates:15:2860284..2886171(+)


>ENSCAFG00000003004
ATGGCGTCGCCCAGCTGCCTGTGGCTCCTGGCCGTCGCCCTCCTGCCGGGGTCCGGCGCTGCCCGGGCGCCCTGGCGTCT
GGACCCGGCCGCGCCGCTGCCGCTGGTGATCTGGCATGGGATGGGAGACAGCTGTTGTAATCCCTTAAGCATGGGAGCTA
TTAAAAAAATGGTTGAGGAGAAAATACCTGGAATTTACGTCTTATCTTTAGAGATTGGGAAGACCCTGATGGAGGATGTG
GAGAACAGCTTCTTCTTGAATGTCAATTCCCAAGTAACAACTGTGTGTCAGATTCTTGCTAAGGATCCTAAATTGCATCA
AGGCTACAATGCTATGGGATTCTCTCAGGGAGGCCAATTTCTGAGGGCAGTGGCTCAGAGATGCCCATCACCTCCCATGA
TCAATCTAATCTCGATTGGGGGACAACATCAAGGTGTTTATGGACTCCCTCGGTGCCCAGGGGAGAGCTCTCACATCTGT
GACTTGATCAGAAAAACACTGAATGCTGGGGCTTACAACAAAGCTATTCAAGAACGCCTGGTGCAAGCAGAGTACTGGCA
CGACCCCATAAAGGAGGACACGTACCGCAACCACAGCATCTTCCTGGCCGATATTAATCAGGAGCGGGGCGTCAATGAGT
CCTACAAGAGAAACCTGATGGCCTTGAAGAAGTTTGTGATGGTGAAATTTCTCAACGATTCCATTGTGGATCCTGTGGAC
TCTGAGTGGTTTGGATTCTACAGAAGTGGCCAAGCCAAGGAAACCATTCCCTTGCAGGAGACCGCTCTGTACACACAGGA
CCGCCTGGGGCTAAAGGAAATGGATAATGCAGGACAGCTAGTGTTCCTGGCTGTAGAAGGGGACCATCTTCAACTGTCTC
AGGAATGGTTTTATGCCCACATCATACCCTTCCTTGAGTAA

Library Parental gene expression (RPM)
SRP017611_brain 204 .04 RPM
SRP017611_kidney 125 .73 RPM
SRP017611_liver 19 .29 RPM
SRP012049_cerebellum 116 .71 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000013367 ortholog_one2one 1 retrogene
retro_btau_348,
Loxodonta africana ENSLAFG00000022663 ortholog_one2one 2 retrogenes
retro_lafr_199, retro_lafr_422,
Procavia capensis ENSPCAG00000002429 ortholog_one2one 1 retrogene
retro_pcap_94,
Tursiops truncatus ENSTTRG00000004339 ortholog_one2one 1 retrogene
retro_ttru_659,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_1985 88.40 59.15
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Download FASTA sequences of all ENSCAFG00000003004 retrocopies