Parental gene: | C10H15ORF23, ENSBTAG00000032340 |
| Aliases: | None |
| Description: | putative TRAF4-associated factor 1 [Source:RefSeq peptide;Acc:NP_001033144] |
| Organism: | Cow (Bos taurus) |
| Coordinates: | 10:36117897..36127741(+) |
>ENSBTAG00000032340
ATGGCAGCTGCCGAAGACGTCGCCCACGCCAGTGACTGCCGTACAACATGGCCTCCTACGGAGAGCGCACCACACCTCCT
TCCGCCCGGTCGCCGGAAGTTTCCCTTTGAAACCCAGGCGGCAGACGCGGTCGGTGGTACGGCAGTTATTGCCGAGCATC
TTTTGAACCAGAGCGACGAGGCGTGCGGGCAGGAGCAGCAGGCACCTGGGCCCCAGCCGTGCCGCCTCGTTACGATGACC
AGCGTGGTTAAGACAGTGTACACCCTGCAGCCCTCCTGTGTGCTGAGCAGCGGTCTGCCTGCAGATGCACAAACTCGAGC
CACTTTTAAGAGCCAGTTACCTGTTAAGTCCAAAGAAGTTGATGTTTCCAGACCTCATTCAGGAGCTTCAGAGAATGATG
TTACAAAAATCATCAAACCGAGACGAGAGAATGGGCAGGTGAAGGCTACAGACACCTCCAGGAGGAACCTCAGGAAGAGC
TACAAACCATTGAGTAAACAGAAATCGGAAGAAGAGCTCAAGGATAAGAACCAGCTCTTAGAGGCTGTCAACAAGCAGTT
GCACCAGAAGTTGATTGAAACTCAGGGAGAGCTGAAAGACCTGACTCAAAAAGTAGAGCTGCTGGAGAAGTTTCAGGACA
ACTGTTTGGCAATTTTAGAAAGCAAAGGCCTCAACCCAGGCAGTGAGACCCTGGCGTCACAGCAAGACTCCACCGCAGAT
CACGTGGACTCCATGCTGCTGTTACAAACTTTGCAAGATGAACTGAAGCTTTTTAACGAAACAGCCAAAAAGCAGATGAA
GGAGTTACAGGCCTTAAAGGTAAAGTTGAAAATGAAAGAAGAAGAGAGAGCCCAGTTCCTTGAACAACAGACCTTATGTA
GCAATCAAGTAAATGATTTCACAACAGCCCTTGAGGAAATGGAGCAGCTATTAGAAATATGA
ATGGCAGCTGCCGAAGACGTCGCCCACGCCAGTGACTGCCGTACAACATGGCCTCCTACGGAGAGCGCACCACACCTCCT
TCCGCCCGGTCGCCGGAAGTTTCCCTTTGAAACCCAGGCGGCAGACGCGGTCGGTGGTACGGCAGTTATTGCCGAGCATC
TTTTGAACCAGAGCGACGAGGCGTGCGGGCAGGAGCAGCAGGCACCTGGGCCCCAGCCGTGCCGCCTCGTTACGATGACC
AGCGTGGTTAAGACAGTGTACACCCTGCAGCCCTCCTGTGTGCTGAGCAGCGGTCTGCCTGCAGATGCACAAACTCGAGC
CACTTTTAAGAGCCAGTTACCTGTTAAGTCCAAAGAAGTTGATGTTTCCAGACCTCATTCAGGAGCTTCAGAGAATGATG
TTACAAAAATCATCAAACCGAGACGAGAGAATGGGCAGGTGAAGGCTACAGACACCTCCAGGAGGAACCTCAGGAAGAGC
TACAAACCATTGAGTAAACAGAAATCGGAAGAAGAGCTCAAGGATAAGAACCAGCTCTTAGAGGCTGTCAACAAGCAGTT
GCACCAGAAGTTGATTGAAACTCAGGGAGAGCTGAAAGACCTGACTCAAAAAGTAGAGCTGCTGGAGAAGTTTCAGGACA
ACTGTTTGGCAATTTTAGAAAGCAAAGGCCTCAACCCAGGCAGTGAGACCCTGGCGTCACAGCAAGACTCCACCGCAGAT
CACGTGGACTCCATGCTGCTGTTACAAACTTTGCAAGATGAACTGAAGCTTTTTAACGAAACAGCCAAAAAGCAGATGAA
GGAGTTACAGGCCTTAAAGGTAAAGTTGAAAATGAAAGAAGAAGAGAGAGCCCAGTTCCTTGAACAACAGACCTTATGTA
GCAATCAAGTAAATGATTTCACAACAGCCCTTGAGGAAATGGAGCAGCTATTAGAAATATGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 4 .34 RPM |
| SRP017611_kidney | 4 .33 RPM |
| SRP017611_liver | 0 .91 RPM |
| ERP005899_muscle | 13 .57 RPM |
| ERP005899_liver | 3 .46 RPM |
| SRP030211_testis | 247 .54 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000007085 | ortholog_one2one | 3 retrogenes | |
| Monodelphis domestica | ENSMODG00000000464 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000009825 | ortholog_one2many | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000012043 | ortholog_one2one | 4 retrogenes | |
| Tursiops truncatus | ENSTTRG00000010577 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_btau_274 | 95.65 | 87.86 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_btau_1217 | 74.43 | 81.79 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSBTAG00000032340 retrocopies