Parental gene: | FTSJ1, ENSBTAG00000031829 |
| Aliases: | None |
| Description: | putative ribosomal RNA methyltransferase 1 [Source:RefSeq peptide;Acc:NP_001071402] |
| Organism: | Cow (Bos taurus) |
| Coordinates: | X:91678172..91687290(+) |
>ENSBTAG00000031829
ATGGGACGGACGTCAAAGGACAAGAGAGATGTCTACTACCGCCTAGCCAAGGAGAATGGCTGGCGTGCCCGCAGTGCCTT
CAAGCTGCTACAACTTGATGAGGAATTCCAACTCTTCCAAGGTGTGACGCGGGCAGTTGACTTGTGTGCGGCCCCAGGCA
GCTGGAGCCAGGTGCTGAGTCAGAAGATTGGGGGCCAAGGGTCTGGCCACGTGGTGGCTGTGGACCTTCAGGCTATGGCT
CCACTACCAGGTGTGTTACAGATCCAGGGGGATATCACCCAGCTGTCCACTGCCAAAGAGATCATCCAGCATTTTGAAGG
CTGCCCCGCGGACCTAGTAGTGTGTGACGGGGCTCCTGATGTAACCGGCCTCCACGATGTTGATGAGTATATGCAGGCCC
AGCTCCTCCTAGCTGCTCTGAATATTGCTACACACGTCTTGAAGCCAGGGGGCTGCTTTGTGGCTAAGATCTTCCGAGGC
CGGGATGTGACGCTGATCTATAGCCAGCTGCGTGTCTTCTTCTCCAGCGTGCTCTGTGCCAAGCCCAGAAGCAGCCGGAA
CTCCAGCATTGAGGCCTTTGCTGTCTGTAAGGGTTACGACCCCCCTGAGGGCTTCCTGCCGGACCTGACCAAACCCCTGC
TGGACCACTCTTATGATCCAGATTTCAACCAGTTGGATGGCCCCACCCGCATCATTGTGCCATTTGTGACCTGTGGGGAC
CTGAGCGCCTATGATTCAGACCGCAGTTACCCACTGGACGAGGCCTGCGCATTGAAGAAGAAGGGGCAGCTGGCCAAGGA
GATCTGCCCCCAGGACTGCCCCATGAGCACAGTGGACTTGTTGCCCCAGTCCCTGGCCACTCCACAGCGCTACACCCTGC
AGACGTCTGAGGTGGAAGACAGTGGAGTGACTTGCTCATCTTAA
ATGGGACGGACGTCAAAGGACAAGAGAGATGTCTACTACCGCCTAGCCAAGGAGAATGGCTGGCGTGCCCGCAGTGCCTT
CAAGCTGCTACAACTTGATGAGGAATTCCAACTCTTCCAAGGTGTGACGCGGGCAGTTGACTTGTGTGCGGCCCCAGGCA
GCTGGAGCCAGGTGCTGAGTCAGAAGATTGGGGGCCAAGGGTCTGGCCACGTGGTGGCTGTGGACCTTCAGGCTATGGCT
CCACTACCAGGTGTGTTACAGATCCAGGGGGATATCACCCAGCTGTCCACTGCCAAAGAGATCATCCAGCATTTTGAAGG
CTGCCCCGCGGACCTAGTAGTGTGTGACGGGGCTCCTGATGTAACCGGCCTCCACGATGTTGATGAGTATATGCAGGCCC
AGCTCCTCCTAGCTGCTCTGAATATTGCTACACACGTCTTGAAGCCAGGGGGCTGCTTTGTGGCTAAGATCTTCCGAGGC
CGGGATGTGACGCTGATCTATAGCCAGCTGCGTGTCTTCTTCTCCAGCGTGCTCTGTGCCAAGCCCAGAAGCAGCCGGAA
CTCCAGCATTGAGGCCTTTGCTGTCTGTAAGGGTTACGACCCCCCTGAGGGCTTCCTGCCGGACCTGACCAAACCCCTGC
TGGACCACTCTTATGATCCAGATTTCAACCAGTTGGATGGCCCCACCCGCATCATTGTGCCATTTGTGACCTGTGGGGAC
CTGAGCGCCTATGATTCAGACCGCAGTTACCCACTGGACGAGGCCTGCGCATTGAAGAAGAAGGGGCAGCTGGCCAAGGA
GATCTGCCCCCAGGACTGCCCCATGAGCACAGTGGACTTGTTGCCCCAGTCCCTGGCCACTCCACAGCGCTACACCCTGC
AGACGTCTGAGGTGGAAGACAGTGGAGTGACTTGCTCATCTTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 15 .71 RPM |
| SRP017611_kidney | 27 .03 RPM |
| SRP017611_liver | 21 .60 RPM |
| ERP005899_muscle | 13 .67 RPM |
| ERP005899_liver | 20 .40 RPM |
| SRP030211_testis | 8 .09 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000015339 | ortholog_one2many | 1 retrogene | |
| Erinaceus europaeus | ENSEEUG00000001469 | ortholog_one2many | 1 retrogene | |
| Echinops telfairi | ENSETEG00000014092 | ortholog_many2many | 3 retrogenes | |
| Myotis lucifugus | ENSMLUG00000003977 | ortholog_one2many | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000008009 | ortholog_many2many | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000016174 | ortholog_many2many | 1 retrogene | |
| Sorex araneus | ENSSARG00000007091 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_btau_27 | 92.09 | 82.41 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSBTAG00000031829 retrocopies