Parental gene:

SNRPC, ENSBTAG00000024549

Aliases:SNRPC, U1C
Description:U1 small nuclear ribonucleoprotein C [Source:UniProtKB/Swiss-Prot;Acc:Q32PA0]
Organism:Cow (Bos taurus)
Coordinates:23:8726524..8737237(-)


>ENSBTAG00000024549
ATGCCTAAATTTTATTGTGACTACTGCGACACATACCTCACCCATGATTCTCCATCTGTGAGGAAGACACACTGCAGTGG
TAGGAAGCACAAGGAGAATGTGAAAGACTACTATCAGAAGTGGATGGAAGAGCAGGCTCAGAGCCTGATTGACAAAACAA
CTGCTGCATTTCAACAAGGAAAGATACCTCCTACTCCATTCTCTGCTCCTCCTCCTGCAGGGGCAATGATCCCACCTCCC
CCCAGTCTCCCGGGTCCTCCTCGCCCTGGGATGATGCCTGCACCTCACATGGGGGGCCCTCCCATGATGCCGATGATGGG
TCCCCCTCCTCCTGGGATGATGCCAGTGGGACCTGCTCCTGGAATGAGGCCGCCTATGGGAGGCCACATGCCAATGATGC
CCGGGCCCCCAATGATGAGACCTCCTGCCCGTCCCATGATGGTGCCCACCCGGCCAGGAATGACCCGACCAGACAGATAA

Library Parental gene expression (RPM)
SRP017611_brain 11 .65 RPM
SRP017611_kidney 15 .88 RPM
SRP017611_liver 16 .01 RPM
ERP005899_muscle 24 .76 RPM
ERP005899_liver 12 .47 RPM
SRP030211_testis 35 .38 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000001231 possible_ortholog 3 retrogenes
retro_cfam_348, retro_cfam_402, retro_cfam_409,
Callithrix jacchus ENSCJAG00000015321 possible_ortholog 16 retrogenes
retro_cjac_1009, retro_cjac_1015, retro_cjac_1064, retro_cjac_1750, retro_cjac_1937, retro_cjac_2014, retro_cjac_2395, retro_cjac_2456, retro_cjac_2785, retro_cjac_3056, retro_cjac_3110, retro_cjac_400, retro_cjac_4010, retro_cjac_617, retro_cjac_770, retro_cjac_873,
Homo sapiens ENSG00000124562 ortholog_one2one 6 retrogenes
retro_hsap_1531, retro_hsap_1866, retro_hsap_2865, retro_hsap_3195, retro_hsap_3829, retro_hsap_4241,
Loxodonta africana ENSLAFG00000013534 ortholog_one2one 2 retrogenes
retro_lafr_621, retro_lafr_878,
Monodelphis domestica ENSMODG00000013904 ortholog_one2one 1 retrogene
retro_mdom_22,
Nomascus leucogenys ENSNLEG00000008392 possible_ortholog 2 retrogenes
retro_nleu_2129, retro_nleu_99,
Oryctolagus cuniculus ENSOCUG00000026668 ortholog_one2one 3 retrogenes
retro_ocun_1019, retro_ocun_184, retro_ocun_196,
Otolemur garnettii ENSOGAG00000008755 possible_ortholog 9 retrogenes
retro_ogar_1040, retro_ogar_130, retro_ogar_1763, retro_ogar_183, retro_ogar_2434, retro_ogar_3064, retro_ogar_3322, retro_ogar_3377, retro_ogar_697,
Pongo abelii ENSPPYG00000017272 possible_ortholog 4 retrogenes
retro_pabe_1271, retro_pabe_3066, retro_pabe_3225, retro_pabe_915,
Sarcophilus harrisii ENSSHAG00000000945 possible_ortholog 1 retrogene
retro_shar_112,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_1636 79.22 95.60
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Download FASTA sequences of all ENSBTAG00000024549 retrocopies