Parental gene:

EEF1B, ENSBTAG00000021979

Aliases:EEF1B2, EEF1B
Description:Elongation factor 1-beta [Source:UniProtKB/Swiss-Prot;Acc:Q5E983]
Organism:Cow (Bos taurus)
Coordinates:2:94922838..94926122(+)


>ENSBTAG00000021979
ATGGGTTTTGGAGACTTGAAAAGCCCCGCTGGCCTCCAGGTGCTCAACGACTACTTGGCGGACAAGAGTTACATAGAGGG
GTATGTGCCATCACAAGCAGATGTAGCAGTGTTTGAAGCCGTCTCCGGCCCACCACCTGCCGACTTGTGTCATGCCCTCC
GTTGGTATAATCATATCAAATCCTATGAGAAGGAAAAGGCCAGCCTGCCAGGAGTGAAGAAAGCTTTGGGCAAGTATGGC
CCTGCTAATGTGGAAGACACCACAGAAAGTGGAGCTACAGATAGTAAAGATGATGACGACATTGATCTCTTTGGATCTGA
TGATGAGGAGGAAAGTGAAGAAGCCAAGAGGCTAAGAGAAGAACGCCTTGCCCAGTATGAGTCAAAGAAAGCCAAAAAAC
CAGCACTTGTCGCCAAGTCTTCCATCTTATTAGACGTGAAACCTTGGGATGATGAGACCGATATGGCAAAACTAGAGGAG
TGCGTCAGAAGCATTCAAGCAGATGGCTTGGTCTGGGGCTCTTCTAAACTAGTTCCGGTTGGGTATGGCATTAAAAAACT
ACAAATACAGTGTGTAGTTGAAGACGACAAAGTTGGGACAGACATGCTGGAGGAGCAGATCACTGCTTTCGATGAGTATG
TACAGTCTATGGATGTGGCTGCATTCAACAAGATCTAA

Library Parental gene expression (RPM)
SRP017611_brain 67 .01 RPM
SRP017611_kidney 153 .45 RPM
SRP017611_liver 125 .19 RPM
ERP005899_muscle 412 .02 RPM
ERP005899_liver 139 .07 RPM
SRP030211_testis 67 .16 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000003015 ortholog_one2one 1 retrogene
retro_amel_427,
Canis familiaris ENSCAFG00000029635 possible_ortholog 1 retrogene
retro_cfam_56,
Choloepus hoffmanni ENSCHOG00000013835 ortholog_one2one 1 retrogene
retro_chof_725,
Callithrix jacchus ENSCJAG00000005805 ortholog_one2many 2 retrogenes
retro_cjac_176, retro_cjac_341,
Dipodomys ordii ENSDORG00000003669 ortholog_one2one 2 retrogenes
retro_dord_510, retro_dord_592,
Felis catus ENSFCAG00000010239 ortholog_one2one 1 retrogene
retro_fcat_1735,
Homo sapiens ENSG00000114942 ortholog_one2one 9 retrogenes
retro_hsap_1154, retro_hsap_1500, retro_hsap_2397, retro_hsap_2883, retro_hsap_3332, retro_hsap_3480, retro_hsap_3657, retro_hsap_3903, retro_hsap_4795,
Gorilla gorilla ENSGGOG00000007002 ortholog_one2many 2 retrogenes
retro_ggor_134, retro_ggor_2000,
Macropus eugenii ENSMEUG00000002654 ortholog_one2one 8 retrogenes
retro_meug_1418, retro_meug_1846, retro_meug_1917, retro_meug_240, retro_meug_241, retro_meug_52, retro_meug_775, retro_meug_949,
Microcebus murinus ENSMICG00000010607 ortholog_one2one 3 retrogenes
retro_mmur_1067, retro_mmur_615, retro_mmur_78,
Myotis lucifugus ENSMLUG00000016602 possible_ortholog 8 retrogenes
retro_mluc_1035, retro_mluc_1068, retro_mluc_1104, retro_mluc_1167, retro_mluc_1542, retro_mluc_1578, retro_mluc_1681, retro_mluc_1857,
Macaca mulatta ENSMMUG00000001054 ortholog_one2one 6 retrogenes
retro_mmul_1456, retro_mmul_1767, retro_mmul_1881, retro_mmul_2140, retro_mmul_894, retro_mmul_969,
Nomascus leucogenys ENSNLEG00000007098 ortholog_one2one 8 retrogenes
retro_nleu_1220, retro_nleu_1676, retro_nleu_2078, retro_nleu_2107, retro_nleu_2521, retro_nleu_2630, retro_nleu_624, retro_nleu_834,
Otolemur garnettii ENSOGAG00000011229 ortholog_one2one 3 retrogenes
retro_ogar_2628, retro_ogar_616, retro_ogar_862,
Oreochromis niloticus ENSONIG00000017630 ortholog_one2many 1 retrogene
retro_onil_28,
Oryzias latipes ENSORLG00000018533 ortholog_one2many 1 retrogene
retro_olat_16,
Procavia capensis ENSPCAG00000013348 ortholog_one2one 1 retrogene
retro_pcap_154,
Pongo abelii ENSPPYG00000013107 ortholog_one2many 7 retrogenes
retro_pabe_1251, retro_pabe_1656, retro_pabe_2163, retro_pabe_2389, retro_pabe_2419, retro_pabe_2746, retro_pabe_2876,
Pteropus vampyrus ENSPVAG00000017334 ortholog_one2one 2 retrogenes
retro_pvam_1055, retro_pvam_56,
Sarcophilus harrisii ENSSHAG00000017853 ortholog_one2many 1 retrogene
retro_shar_208,
Sus scrofa ENSSSCG00000016128 ortholog_one2one 1 retrogene
retro_sscr_766,
Ictidomys tridecemlineatus ENSSTOG00000005437 ortholog_one2many 3 retrogenes
retro_itri_1263, retro_itri_813, retro_itri_873,
Tupaia belangeri ENSTBEG00000005657 ortholog_one2one 13 retrogenes
retro_tbel_161, retro_tbel_2046, retro_tbel_2094, retro_tbel_2298, retro_tbel_2700, retro_tbel_2776, retro_tbel_3143, retro_tbel_3541, retro_tbel_3542, retro_tbel_4050, retro_tbel_4073, retro_tbel_4205, retro_tbel_611,
Xiphophorus maculatus ENSXMAG00000006050 ortholog_one2many 1 retrogene
retro_xmac_21,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_366 91.86 97.78
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2. retro_btau_367 91.86 97.78
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3. retro_btau_450 92.92 100.00
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4. retro_btau_512 93.36 100.00
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5. retro_btau_792 78.36 75.56
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6. retro_btau_1127 77.78 75.56
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7. retro_btau_1309 83.26 100.00
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8. retro_btau_1786 74.05 68.89
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Download FASTA sequences of all ENSBTAG00000021979 retrocopies