Parental gene:

LDHB, ENSBTAG00000019603

Aliases:None
Description:L-lactate dehydrogenase B chain [Source:UniProtKB/Swiss-Prot;Acc:Q5E9B1]
Organism:Cow (Bos taurus)
Coordinates:5:88962678..88981219(+)


>ENSBTAG00000019603
ATGGCAACTCTTAAGGAAAAATTGATTGCACCAGTTGCAGAAGAAGAGACAAGGATCCCAAACAATAAGATCACTGTAGT
GGGTGTTGGACAAGTTGGTATGGCATGTGCCATCAGCATTCTGGGAAAGTCTCTGACTGACGAGCTTGCTCTTGTGGATG
TTTTGGAAGATAAACTCAAAGGAGAAATGATGGACCTGCAGCACGGGAGCTTATTCCTTCAGACACCAAAAATTGTGGCA
GACAAAGATTACTCTGTCACTGCCAATTCCAAGATTGTGGTGGTAACTGCAGGAGTTCGCCAGCAAGAAGGGGAGAGTCG
CCTGAATTTGGTGCAAAGGAACGTTAACGTCTTCAAGTTCATCATTCCTCAGATCGTCAAGTACAGTCCTGACTGCATCA
TCATTGTGGTTTCCAACCCAGTGGATATTCTCACATATGTTACCTGGAAACTAAGTGGATTACCCAAGCACCGTGTGATT
GGGAGTGGATGTAACCTGGATTCTGCTAGATTTCGCTACCTTATGGCTGAAAAACTTGGCATTCATCCCAGCAGCTGCCA
CGGATGGATTTTGGGGGAACATGGCGACTCAAGCGTGGCTGTGTGGAGTGGAGTGAATGTGGCAGGCGTTTCTCTCCAGG
AACTGAATCCAGAAATGGGAACAGACAATGATAGTGAAAATTGGAAGGAAGTGCATAAGATGGTGGTTGAGAGTGCCTAT
GAAGTCATCAAGCTAAAAGGATATACCAACTGGGCTATTGGATTAAGTGTGGCTGATCTTATTGAATCCATGTTGAAAAA
TCTATCGAGGATTCACCCAGTGTCAACAATGGTGAAGGGCATGTATGGCATTGAGAATGAAGTCTTCCTGAGCCTTCCGT
GTATCCTGAATGCTCGAGGGTTAACCAGTGTTATCAACCAGAAGCTGAAGGATGAAGAGGTTGCTCAACTCAAGAAAAGT
GCAGACACCCTCTGGGGCATCCAAAAGGACCTGAAGGACCTGTGA

Library Parental gene expression (RPM)
SRP017611_brain 243 .01 RPM
SRP017611_kidney 692 .59 RPM
SRP017611_liver 344 .24 RPM
ERP005899_muscle 96 .87 RPM
ERP005899_liver 127 .25 RPM
SRP030211_testis 38 .67 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000016175 possible_ortholog 4 retrogenes
retro_amel_1316, retro_amel_814, retro_amel_882, retro_amel_977,
Bos taurus ENSBTAG00000008683 within_species_paralog 2 retrogenes
retro_btau_1715, retro_btau_1822,
Canis familiaris ENSCAFG00000012195 possible_ortholog 9 retrogenes
retro_cfam_1068, retro_cfam_111, retro_cfam_1674, retro_cfam_17, retro_cfam_1700, retro_cfam_174, retro_cfam_1836, retro_cfam_701, retro_cfam_93,
Cavia porcellus ENSCPOG00000007138 ortholog_one2one 1 retrogene
retro_cpor_762,
Echinops telfairi ENSETEG00000019955 ortholog_one2one 1 retrogene
retro_etel_850,
Felis catus ENSFCAG00000012639 possible_ortholog 1 retrogene
retro_fcat_462,
Macropus eugenii ENSMEUG00000004825 ortholog_one2one 1 retrogene
retro_meug_311,
Myotis lucifugus ENSMLUG00000012155 ortholog_one2many 1 retrogene
retro_mluc_202,
Macaca mulatta ENSMMUG00000002679 possible_ortholog 4 retrogenes
retro_mmul_212, retro_mmul_303, retro_mmul_308, retro_mmul_315,
Monodelphis domestica ENSMODG00000017786 ortholog_one2one 1 retrogene
retro_mdom_1484,
Mustela putorius furo ENSMPUG00000000172 possible_ortholog 5 retrogenes
retro_mputfur_1300, retro_mputfur_1561, retro_mputfur_492, retro_mputfur_539, retro_mputfur_549,
Oryctolagus cuniculus ENSOCUG00000022015 ortholog_one2one 1 retrogene
retro_ocun_805,
Sorex araneus ENSSARG00000002565 ortholog_one2one 1 retrogene
retro_sara_713,
Sus scrofa ENSSSCG00000000576 ortholog_one2many 1 retrogene
retro_sscr_37,
Ictidomys tridecemlineatus ENSSTOG00000022058 ortholog_one2one 2 retrogenes
retro_itri_501, retro_itri_648,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_303 97.01 100.00
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2. retro_btau_451 81.00 58.98
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3. retro_btau_647 79.66 52.99
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4. retro_btau_1589 51.14 51.50
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Download FASTA sequences of all ENSBTAG00000019603 retrocopies