Parental gene: | SFT2D1, ENSBTAG00000002993 |
| Aliases: | None |
| Description: | vesicle transport protein SFT2A [Source:RefSeq peptide;Acc:NP_001029723] |
| Organism: | Cow (Bos taurus) |
| Coordinates: | 9:102827387..102842498(-) |
>ENSBTAG00000002993
ATGGAGAAGCTGCGGCGGGTGCTAAGCGGCCAGGACGACGAGGAGCAGGGCCTGACCGCGCAGGTCCTTGATGCCTCGAC
GCTCAGTTTCAACACCAGGCTGAAGTGGTTTGCCATATGCTTCGTCAGTGGCATCTTCTTCTCCATCCTTGGAACTGGAT
TGCTGTGGCTCCCTGGAGGCATAAAGCTTTTTGCAGTGTTTTACACCTTTGGAAATATTGCTGCGTTGGCCAGTACATGC
TTTTTAATGGGGCCCGTGAAACAGCTGAAGAAAATGTTTGAAACAACGAGACTGCTTGCAACAGTTATTATGCTTCTGTG
TTTCGTGCTCACCCTGTGCGCTGCCCTTTGGTGGCATAAGAAGGGGCTGGCCGTATTATTCTGCATATTGCAGTTCCTGT
CGATGACCTGGTACAGCCTGTCATATATCCCGTATGCAAGGGATGCAGTAATTAAGTGCTGTTCTTCTCTTCTGAGCTGA
ATGGAGAAGCTGCGGCGGGTGCTAAGCGGCCAGGACGACGAGGAGCAGGGCCTGACCGCGCAGGTCCTTGATGCCTCGAC
GCTCAGTTTCAACACCAGGCTGAAGTGGTTTGCCATATGCTTCGTCAGTGGCATCTTCTTCTCCATCCTTGGAACTGGAT
TGCTGTGGCTCCCTGGAGGCATAAAGCTTTTTGCAGTGTTTTACACCTTTGGAAATATTGCTGCGTTGGCCAGTACATGC
TTTTTAATGGGGCCCGTGAAACAGCTGAAGAAAATGTTTGAAACAACGAGACTGCTTGCAACAGTTATTATGCTTCTGTG
TTTCGTGCTCACCCTGTGCGCTGCCCTTTGGTGGCATAAGAAGGGGCTGGCCGTATTATTCTGCATATTGCAGTTCCTGT
CGATGACCTGGTACAGCCTGTCATATATCCCGTATGCAAGGGATGCAGTAATTAAGTGCTGTTCTTCTCTTCTGAGCTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 25 .49 RPM |
| SRP017611_kidney | 52 .40 RPM |
| SRP017611_liver | 11 .78 RPM |
| ERP005899_muscle | 64 .35 RPM |
| ERP005899_liver | 41 .02 RPM |
| SRP030211_testis | 19 .12 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000009311 | ortholog_one2many | 3 retrogenes | |
| Canis familiaris | ENSCAFG00000000811 | ortholog_one2many | 2 retrogenes | |
| Equus caballus | ENSECAG00000019479 | ortholog_one2many | 1 retrogene | |
| Mus musculus | ENSMUSG00000073468 | ortholog_many2many | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000001200 | ortholog_one2many | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000006302 | ortholog_one2many | 1 retrogene | |
| Ochotona princeps | ENSOPRG00000003408 | ortholog_one2many | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000017165 | ortholog_many2many | 1 retrogene | |
| Pteropus vampyrus | ENSPVAG00000012673 | possible_ortholog | 3 retrogenes | |
| Sus scrofa | ENSSSCG00000004020 | ortholog_one2one | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000000045 | ortholog_one2many | 2 retrogenes | |
| Tursiops truncatus | ENSTTRG00000004447 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_btau_31 | 81.76 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_btau_546 | 52.07 | 72.96 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_btau_900 | 88.54 | 97.48 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_btau_1458 | 58.16 | 87.42 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_btau_1460 | 86.18 | 95.60 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSBTAG00000002993 retrocopies