Parental gene: | VPS35, ENSBTAG00000002493 |
| Aliases: | None |
| Description: | Vacuolar protein sorting-associated protein 35 [Source:UniProtKB/Swiss-Prot;Acc:Q2HJG5] |
| Organism: | Cow (Bos taurus) |
| Coordinates: | 18:15038820..15066463(-) |
>ENSBTAG00000002493
ATGCCTACAACACAGCAGTCACCGCAGGATGAGCAGGAAAAACTCTTGGATGAAGCCATACAGGCTGTGAAGGTCCAGTC
ATTCCAGATGAAGAGATGCCTGGACAAAAACAAGCTTATGGATGCTCTGAAACATGCTTCTAATATGCTTGGTGAACTGC
GGACTTCTATGTTATCACCAAAGAGCTACTATGAACTTTATATGGCTATTTCTGATGAACTGCACTACTTGGAAGTTTAC
CTGACAGATGAATTTGCTAAAGGAAGAAAAGTGGCAGATCTCTATGAACTTGTACAGTATGCCGGAAACATTATCCCAAG
GCTTTACCTGTTGATCACAGTTGGAGTTGTATACGTCAAGTCGTTTCCTCAGTCCAGGAAAGATATTTTGAAAGATTTGG
TAGAAATGTGCCGTGGTGTGCAACATCCCTTGAGAGGTCTGTTTCTTCGAAATTATCTACTTCAGTGTACCAGAAACATC
TTACCTGATGAAGGGGAGCCAACAGATGAAGAAACAACTGGTGATATCAGTGATTCCATGGATTTTGTCCTACTCAACTT
TGCAGAAATGAACAAGCTCTGGGTTCGAATGCAGCATCAGGGACATAGCCGAGATAGAGAAAAAAGAGAACGAGAAAGAC
AAGAACTGAGAATTTTAGTGGGAACAAATTTGGTGCGCCTTAGTCAGTTGGAAGGTGTAAATGTGGAACGTTACAAACAG
ATTGTTTTGACCGGCATATTGGAGCAAGTGGTGAATTGCAGAGATGCTTTGGCTCAGGAATATCTCATGGAGTGCATTAT
TCAGGTTTTCCCTGATGAATTCCACCTTCAAACTTTGAATCCTTTTCTTCGGGCCTGTGCTGAGTTACACCAAAATGTAA
ATGTGAAAAACATAATCATTGCTTTAATTGATAGATTAGCTTTATTTGCTCACCGTGAAGATGGACCTGGAATCCCAACA
GATATTAAACTTTTTGACATATTTTCACAGCAGGTGGCTACAGTAATACAGTCTAGACAAGACATGCCTTCGGAGGATGT
TGTATCTTTACAAGTCTCTCTCATTAATCTCGCTATGAAGTGTTATCCTGATCGTGTGGACTATGTTGATAAAGTTCTAG
AAACAACAGTGGAGATATTTAATAAGCTCAACCTTGAACATATTGCTACCAGTAGTGCAGTTTCAAAGGAGCTCACCAGA
CTTTTGAAGATTCCTGTTGACACTTACAACAATATTTTAACAGTCTTGAAATTAAAACATTTCCACCCACTCTTTGAGTA
TTTTGACTATGAGTCCAGAAAGAGCATGAGTTGTTACGTGCTTAGTAATGTTCTAGATTATAATACAGAAATTGTCTCTC
AAGACCAGGTGGATTCCATAATGAATTTGGTATCTACACTGATTCAGGATCAGCCAGATCAACCTGTAGAAGAACCTGAC
CCAGAGGACTTTGCTGATGAGCAGAGCCTTGTGGGCAGATTCATTCATCTTCTACGATCTGAGGACCCTGATCAACAGTA
CTTGATTTTAAACACAGCACGAAAACATTTTGGAGCTGGTGGAAATCAACGGATTCGCTTCACACTGCCACCTTTGGTAT
TTGCAGCTTACCAGCTGGCTTTTCGCTACAAAGAGAATTCTAAAGTGGATGACAAATGGGAAAAGAAATGCCAGAAGATT
TTTTCATTTGCTCACCAGACTATTAGTGCTTTGATCAAAGCAGAGCTGGCAGAATTACCCTTAAGACTTTTTCTTCAGGG
GGCTCTGGCTGCTGGAGAAATTGGTTTTGAAAATCATGAAACAGTAGCATATGAATTTATGTCCCAGGCGTTTTCTCTGT
ACGAAGATGAAATCAGTGATTCCAAAGCACAACTGGCTGCCATCACCTTGATCATTGGTACTTTTGAGAGGATGAAGTGC
TTCAGTGAAGAAAACCATGAACCCTTGAGGACTCAGTGTGCTCTTGCTGCATCCAAACTTCTGAAGAAGCCTGATCAGGG
CCGAGCTGTGAGCACCTGTGCACATCTCTTCTGGTCTGGCAGAAACACAGACAAAAACGGAGAGGAGCTGCATGGAGGCA
AAAGGGTAATGGAATGCCTAAAGAAAGCTCTGAAAATAGCAAATCAGTGCATGGACCCCTCTCTACAAGTGCAACTTTTT
ATAGAAATCCTGAACAGATATATCTATTTTTATGAAAAGGAAAATGATGCGGTCACTATTCAGGTTTTGAATCAGCTTAT
CCAAAAGATTCGAGAAGACCTCCCAAATCTTGAATCCAGTGAAGAAACAGAGCAGATTAACAAACATTTTCATAACACAC
TGGAGCACTTGCGTTTGAGGCGGGAATCACCAGAATCTGAAGGGCCAATTTATGAGGGTCTCATCCTTTAA
ATGCCTACAACACAGCAGTCACCGCAGGATGAGCAGGAAAAACTCTTGGATGAAGCCATACAGGCTGTGAAGGTCCAGTC
ATTCCAGATGAAGAGATGCCTGGACAAAAACAAGCTTATGGATGCTCTGAAACATGCTTCTAATATGCTTGGTGAACTGC
GGACTTCTATGTTATCACCAAAGAGCTACTATGAACTTTATATGGCTATTTCTGATGAACTGCACTACTTGGAAGTTTAC
CTGACAGATGAATTTGCTAAAGGAAGAAAAGTGGCAGATCTCTATGAACTTGTACAGTATGCCGGAAACATTATCCCAAG
GCTTTACCTGTTGATCACAGTTGGAGTTGTATACGTCAAGTCGTTTCCTCAGTCCAGGAAAGATATTTTGAAAGATTTGG
TAGAAATGTGCCGTGGTGTGCAACATCCCTTGAGAGGTCTGTTTCTTCGAAATTATCTACTTCAGTGTACCAGAAACATC
TTACCTGATGAAGGGGAGCCAACAGATGAAGAAACAACTGGTGATATCAGTGATTCCATGGATTTTGTCCTACTCAACTT
TGCAGAAATGAACAAGCTCTGGGTTCGAATGCAGCATCAGGGACATAGCCGAGATAGAGAAAAAAGAGAACGAGAAAGAC
AAGAACTGAGAATTTTAGTGGGAACAAATTTGGTGCGCCTTAGTCAGTTGGAAGGTGTAAATGTGGAACGTTACAAACAG
ATTGTTTTGACCGGCATATTGGAGCAAGTGGTGAATTGCAGAGATGCTTTGGCTCAGGAATATCTCATGGAGTGCATTAT
TCAGGTTTTCCCTGATGAATTCCACCTTCAAACTTTGAATCCTTTTCTTCGGGCCTGTGCTGAGTTACACCAAAATGTAA
ATGTGAAAAACATAATCATTGCTTTAATTGATAGATTAGCTTTATTTGCTCACCGTGAAGATGGACCTGGAATCCCAACA
GATATTAAACTTTTTGACATATTTTCACAGCAGGTGGCTACAGTAATACAGTCTAGACAAGACATGCCTTCGGAGGATGT
TGTATCTTTACAAGTCTCTCTCATTAATCTCGCTATGAAGTGTTATCCTGATCGTGTGGACTATGTTGATAAAGTTCTAG
AAACAACAGTGGAGATATTTAATAAGCTCAACCTTGAACATATTGCTACCAGTAGTGCAGTTTCAAAGGAGCTCACCAGA
CTTTTGAAGATTCCTGTTGACACTTACAACAATATTTTAACAGTCTTGAAATTAAAACATTTCCACCCACTCTTTGAGTA
TTTTGACTATGAGTCCAGAAAGAGCATGAGTTGTTACGTGCTTAGTAATGTTCTAGATTATAATACAGAAATTGTCTCTC
AAGACCAGGTGGATTCCATAATGAATTTGGTATCTACACTGATTCAGGATCAGCCAGATCAACCTGTAGAAGAACCTGAC
CCAGAGGACTTTGCTGATGAGCAGAGCCTTGTGGGCAGATTCATTCATCTTCTACGATCTGAGGACCCTGATCAACAGTA
CTTGATTTTAAACACAGCACGAAAACATTTTGGAGCTGGTGGAAATCAACGGATTCGCTTCACACTGCCACCTTTGGTAT
TTGCAGCTTACCAGCTGGCTTTTCGCTACAAAGAGAATTCTAAAGTGGATGACAAATGGGAAAAGAAATGCCAGAAGATT
TTTTCATTTGCTCACCAGACTATTAGTGCTTTGATCAAAGCAGAGCTGGCAGAATTACCCTTAAGACTTTTTCTTCAGGG
GGCTCTGGCTGCTGGAGAAATTGGTTTTGAAAATCATGAAACAGTAGCATATGAATTTATGTCCCAGGCGTTTTCTCTGT
ACGAAGATGAAATCAGTGATTCCAAAGCACAACTGGCTGCCATCACCTTGATCATTGGTACTTTTGAGAGGATGAAGTGC
TTCAGTGAAGAAAACCATGAACCCTTGAGGACTCAGTGTGCTCTTGCTGCATCCAAACTTCTGAAGAAGCCTGATCAGGG
CCGAGCTGTGAGCACCTGTGCACATCTCTTCTGGTCTGGCAGAAACACAGACAAAAACGGAGAGGAGCTGCATGGAGGCA
AAAGGGTAATGGAATGCCTAAAGAAAGCTCTGAAAATAGCAAATCAGTGCATGGACCCCTCTCTACAAGTGCAACTTTTT
ATAGAAATCCTGAACAGATATATCTATTTTTATGAAAAGGAAAATGATGCGGTCACTATTCAGGTTTTGAATCAGCTTAT
CCAAAAGATTCGAGAAGACCTCCCAAATCTTGAATCCAGTGAAGAAACAGAGCAGATTAACAAACATTTTCATAACACAC
TGGAGCACTTGCGTTTGAGGCGGGAATCACCAGAATCTGAAGGGCCAATTTATGAGGGTCTCATCCTTTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 87 .29 RPM |
| SRP017611_kidney | 98 .15 RPM |
| SRP017611_liver | 26 .73 RPM |
| ERP005899_muscle | 82 .67 RPM |
| ERP005899_liver | 63 .88 RPM |
| SRP030211_testis | 73 .29 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000010203 | ortholog_one2one | 1 retrogene | |
| Cavia porcellus | ENSCPOG00000003773 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_btau_1810 | 95.49 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSBTAG00000002493 retrocopies